Compounds And Methods For Modulating Expression Of Gcgr

  • Published: Oct 3, 2012
  • Earliest Priority: Jun 23 2006
  • Family: 6
  • Cited Works: 46
  • Cited by: 0
  • Cites: 46
  • Sequences: 1576
  • Additional Info: Cited Works
Data obtained from: EPO Sequence Listings
1,576 sequences found in this patent (in total)

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Displaying 1 - 10 of 1,576 sequences

SEQ ID NO
Length
Sequence Type
Locations
Declared organism
Determined organism
Occurrence
Tools
SEQ ID NO
1
Length
14,121
Sequence Type
DNA
Locations
Undetermined
Declared organism
Homo sapiens
Determined organism
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:34330
      X04506
      1 of 11 hits reported for Homo sapiens.
    • Hit length
      14,121 bp
    • E Value
      0E0
    • BLAST Score
      26,077.7 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      X04506
      100% cov
    • Alignment Length
      14,121 bp
    • CIGAR string
      14121M mismatches: 0 - insertions: 0 - deletions: 0
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:332812880
      XM_515323
    • Hit length
      14,242 bp
    • E Value
      0E0
    • BLAST Score
      25,364.9 bits
    • Similarity
      99.09%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      XM_515323
      99.13% cov
    • Alignment Length
      14,121 bp
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:260158877
      GU014832
      1 of 2 hits reported for synthetic construct.
    • Hit length
      13,769 bp
    • E Value
      0E0
    • BLAST Score
      25,183.9 bits
    • Similarity
      99.87%
    • Coverage
      96.95%
    • Alignment (schematic)

      SEQ ID NO 1
      96.95% cov
      GU014832
      99.43% cov
    • Alignment Length
      13,691 bp
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332242895
      XM_003270568
    • Hit length
      14,113 bp
    • E Value
      0E0
    • BLAST Score
      24,299.3 bits
    • Similarity
      97.75%
    • Coverage
      99.98%
    • Alignment (schematic)

      SEQ ID NO 1
      99.98% cov
      XM_003270568
      99.95% cov
    • Alignment Length
      14,121 bp
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:297265524
      XM_001097500
    • Hit length
      14,739 bp
    • E Value
      0E0
    • BLAST Score
      23,169.2 bits
    • Similarity
      96.31%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      XM_001097500
      95.64% cov
    • Alignment Length
      14,134 bp
  • Callithrix jacchus

    Callithrix jacchus

    • Public DB hit
      GI:296224395
      XM_002757970
    • Hit length
      13,764 bp
    • E Value
      0E0
    • BLAST Score
      20,105.6 bits
    • Similarity
      93.36%
    • Coverage
      96.39%
    • Alignment (schematic)

      SEQ ID NO 1
      96.39% cov
      XM_002757970
      98.8% cov
    • Alignment Length
      13,654 bp
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:297668100
      XM_002812246
    • Hit length
      11,186 bp
    • E Value
      0E0
    • BLAST Score
      19,583 bits
    • Similarity
      98.29%
    • Coverage
      79.15%
    • Alignment (schematic)

      SEQ ID NO 1
      79.15% cov
      XM_002812246
      99.92% cov
    • Alignment Length
      11,179 bp
Occurrence
201 times in PatSeqDB
Tools
SEQ ID NO
2
Length
13,928
Sequence Type
DNA
Locations
Undetermined
Declared organism
Mus musculus
Determined organism
  • Mus musculus

    Mus musculus

    • Public DB hit
      GI:161702987
      NM_009693
      1 of 7 hits reported for Mus musculus.
    • Hit length
      13,931 bp
    • E Value
      0E0
    • BLAST Score
      25,678.8 bits
    • Similarity
      100%
    • Coverage
      99.83%
    • Alignment (schematic)

      SEQ ID NO 2
      99.83% cov
      NM_009693
      99.81% cov
    • Alignment Length
      13,905 bp
    • CIGAR string
      23H13905M mismatches: 0 - insertions: 0 - deletions: 0
  • Rattus norvegicus

    Rattus norvegicus

    • Public DB hit
      GI:161783808
      NM_019287
      1 of 3 hits reported for Rattus norvegicus.
    • Hit length
      14,091 bp
    • E Value
      0E0
    • BLAST Score
      18,835.1 bits
    • Similarity
      91.9%
    • Coverage
      96.83%
    • Alignment (schematic)

      SEQ ID NO 2
      96.83% cov
      NM_019287
      95.76% cov
    • Alignment Length
      13,547 bp
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:297265524
      XM_001097500
    • Hit length
      14,739 bp
    • E Value
      0E0
    • BLAST Score
      7,192 bits
    • Similarity
      80.33%
    • Coverage
      70.4%
    • Alignment (schematic)

      SEQ ID NO 2
      70.4% cov
      XM_001097500
      66.63% cov
    • Alignment Length
      10,031 bp
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332242895
      XM_003270568
    • Hit length
      14,113 bp
    • E Value
      0E0
    • BLAST Score
      7,166.1 bits
    • Similarity
      81.53%
    • Coverage
      64%
    • Alignment (schematic)

      SEQ ID NO 2
      64% cov
      XM_003270568
      63.29% cov
    • Alignment Length
      9,102 bp
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:105990531
      NM_000384
      1 of 7 hits reported for Homo sapiens.
    • Hit length
      14,121 bp
    • E Value
      0E0
    • BLAST Score
      7,038.7 bits
    • Similarity
      81.34%
    • Coverage
      63.81%
    • Alignment (schematic)

      SEQ ID NO 2
      63.81% cov
      NM_000384
      63.06% cov
    • Alignment Length
      9,085 bp
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:260158877
      GU014832
      1 of 2 hits reported for synthetic construct.
    • Hit length
      13,769 bp
    • E Value
      0E0
    • BLAST Score
      7,038.7 bits
    • Similarity
      81.34%
    • Coverage
      63.81%
    • Alignment (schematic)

      SEQ ID NO 2
      63.81% cov
      GU014832
      64.67% cov
    • Alignment Length
      9,085 bp
Occurrence
57 times in PatSeqDB
Tools
SEQ ID NO
3
Length
2,273
Sequence Type
DNA
Locations
Undetermined
Declared organism
Homo sapiens
Determined organism
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:338052
      M95549
      1 of 2 hits reported for Homo sapiens.
    • Hit length
      2,273 bp
    • E Value
      0E0
    • BLAST Score
      4,198.6 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      M95549
      100% cov
    • Alignment Length
      2,273 bp
    • CIGAR string
      2273M mismatches: 0 - insertions: 0 - deletions: 0
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:332845770
      XM_003315069
    • Hit length
      2,268 bp
    • E Value
      0E0
    • BLAST Score
      4,130.2 bits
    • Similarity
      99.56%
    • Coverage
      99.65%
    • Alignment (schematic)

      SEQ ID NO 3
      99.65% cov
      XM_003315069
      99.87% cov
    • Alignment Length
      2,265 bp
    • CIGAR string
      7H49MN346MN574MN309MN387MN37MN51MN39MN17MN404MN42M1H mismatches: 10 - insertions: 0 - deletions: 0
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:197100962
      NM_001131821
    • Hit length
      2,278 bp
    • E Value
      0E0
    • BLAST Score
      3,954.8 bits
    • Similarity
      98.15%
    • Coverage
      99.74%
    • Alignment (schematic)

      SEQ ID NO 3
      99.74% cov
      NM_001131821
      99.56% cov
    • Alignment Length
      2,270 bp
    • CIGAR string
      2H3MD50MN11MD2MI20MN190MN57MN23MN2MN176MN305MN11MN8MN83MN121MN15MN28MN27MN59MN188MN5MN5MN50MN110MN32MN5MN34MN28MNMN35MN39MN38MN12MN18MN2MN75MN106MN36MN6MN34MI45MN58MI75M4H mismatches: 37 - insertions: 3 - deletions: 2
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332262937
      XM_003280467
    • Hit length
      2,256 bp
    • E Value
      0E0
    • BLAST Score
      3,943.7 bits
    • Similarity
      98.52%
    • Coverage
      98.28%
    • Alignment (schematic)

      SEQ ID NO 3
      98.28% cov
      XM_003280467
      99.02% cov
    • Alignment Length
      2,234 bp
    • CIGAR string
      35H21MN12MN39MN8MN80MN344MN41MN59MN215MN8MN205MN193MN13MN41MN32MN38MN143MN29MN38MN34MN18MN9MNMN35MN39MN38MN48MN205MN51MN7MN51MN57MN9MN40M4H mismatches: 33 - insertions: 0 - deletions: 0
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:297283907
      XM_001113206
    • Hit length
      2,267 bp
    • E Value
      0E0
    • BLAST Score
      3,801.5 bits
    • Similarity
      96.96%
    • Coverage
      99.65%
    • Alignment (schematic)

      SEQ ID NO 3
      99.65% cov
      XM_001113206
      99.91% cov
    • Alignment Length
      2,268 bp
    • CIGAR string
      7H49MN12MN9MN17MN35MN72MN97MN11MN38MN20MN2MN89MN17MN71MN83MN9MN68MN7MN49MN81MN8MN11MN26MN59MN26MN17MN23MN71MN116MN35MIMD94MN32MN5MN17MN23MN56MN65MN35MN11MN9MN7MN15MDMI6MN21MNMN35MN8MN30MN38MN14MN10MN15MN40MN43MN7MN22MN53MN5MN36MN6MN29MI3MD23MN38MN9MN86MN9MN13M1H mismatches: 63 - insertions: 3 - deletions: 3
  • Callithrix jacchus

    Callithrix jacchus

    • Public DB hit
      GI:296233359
      XM_002807824
    • Hit length
      2,019 bp
    • E Value
      0E0
    • BLAST Score
      3,086.9 bits
    • Similarity
      94.27%
    • Coverage
      88.83%
    • Alignment (schematic)

      SEQ ID NO 3
      88.83% cov
      XM_002807824
      100% cov
    • Alignment Length
      2,024 bp
    • CIGAR string
      20H15MN20MN4MN7MN3MN5M2N25MN23MN2MN38MN3MNMN14MN53MN56MN50MN5MN2MN2MN3MN4MN2MN41MN32MN32MN14MN56MN44MN23MN14MN2MN101MN8MDMI6MN14MD2MI5MN7MN18MN10MN5MN5MN23MN2MN5MN50MN41MN5MN26MN17MN12MN4MN5MN2MN17MN2MN20MN48MN12MIMD65MN38MN11MN6MN2MN85MN32MN5MN23MN11MDMI62MN17MN25MN2MN5MN11MN2MN5MN20MN17MN2MN6MN7MN12MN3MN6MN2MN8MN5MI4MDMN35MN23MN15MN2MN50MNMN12M2N6MN44MN2M2NMNMN17MN14MN2MN14MN26MN48MN2MN11MN12M234H mismatches: 106 - insertions: 5 - deletions: 5
  • Canis lupus familiaris

    Canis lupus familiaris

    • Public DB hit
      GI:55741755
      NM_001007142
    • Hit length
      2,019 bp
    • E Value
      0E0
    • BLAST Score
      2,647.4 bits
    • Similarity
      90.29%
    • Coverage
      88.83%
    • Alignment (schematic)

      SEQ ID NO 3
      88.83% cov
      NM_001007142
      100% cov
    • Alignment Length
      2,029 bp
    • CIGAR string
      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 mismatches: 177 - insertions: 10 - deletions: 10
  • Bos taurus

    Bos taurus

    • Public DB hit
      GI:42733597
      NM_203360
    • Hit length
      2,275 bp
    • E Value
      0E0
    • BLAST Score
      2,527.3 bits
    • Similarity
      88.52%
    • Coverage
      92.21%
    • Alignment (schematic)

      SEQ ID NO 3
      92.21% cov
      NM_203360
      92.22% cov
    • Alignment Length
      2,117 bp
    • CIGAR string
      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 mismatches: 203 - insertions: 21 - deletions: 19
  • Equus caballus

    Equus caballus

    • Public DB hit
      GI:194218984
      XM_001495481
    • Hit length
      2,022 bp
    • E Value
      0E0
    • BLAST Score
      2,486.7 bits
    • Similarity
      88.99%
    • Coverage
      88.74%
    • Alignment (schematic)

      SEQ ID NO 3
      88.74% cov
      XM_001495481
      99.9% cov
    • Alignment Length
      2,034 bp
    • CIGAR string
      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 mismatches: 193 - insertions: 17 - deletions: 14
  • Oryctolagus cuniculus

    Oryctolagus cuniculus

    • Public DB hit
      GI:130489901
      NM_001082669
    • Hit length
      2,238 bp
    • E Value
      0E0
    • BLAST Score
      2,449.8 bits
    • Similarity
      88.33%
    • Coverage
      90.28%
    • Alignment (schematic)

      SEQ ID NO 3
      90.28% cov
      NM_001082669
      91.69% cov
    • Alignment Length
      2,074 bp
    • CIGAR string
      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 mismatches: 198 - insertions: 22 - deletions: 22
  • Ailuropoda melanoleuca

    Ailuropoda melanoleuca

    • Public DB hit
      GI:301780857
      XM_002925803
    • Hit length
      2,022 bp
    • E Value
      0E0
    • BLAST Score
      2,431.3 bits
    • Similarity
      88.5%
    • Coverage
      88.74%
    • Alignment (schematic)

      SEQ ID NO 3
      88.74% cov
      XM_002925803
      99.9% cov
    • Alignment Length
      2,034 bp
    • CIGAR string
      20H8M2N7MN8MNMN5MD2MI4M3N5MN2MI3MDN3MN4MDMIN12MN11MN20MN2MN3MN31MN2MN23MN20MN8MN5MN47MN5MN14MN2MN5MN14MN12MNMN9MNMN2MN2MN2MN11MN5MN5MN2MN5MN23MN4M2N20MDMI7MN2MI4MD19MN2MN17MN2MN8MN2MN38MN5MN14MN5MN17MN5MN8MN5MN2MN17MI6MD4MN45MN2MN12MN3MD2MI3MN3MN11MN2MN8MNM2N5MN8MN4MN8MN9MN21MN10MN5MN2MN20MN2MN2MN2MN50MN47MN2MN3MN9MN9MN35MN2MN2MN14MN8MN10MN12MN2MN11MN23MN2MN17MN8MN47MN26MN32MN5MN20MN2MN18MN9M2N2MN2MN11MN17MN8MN8MN8MN5MN5MN11MN41MN5MN2MN3MN4MN14MN2MN11MN5MN5MN11MN11MN20MN5MN11M2N2MN8MN16MN5MN2MN2MN3MN22M3N6MN8MN2MN8MIMDMN20MN8MN5MN11MN2MN5MN5MN5M2N3MNMN4MIMN2I6MN4M2N6MN5MI3MD3MIM2NDMDMI8MNMN9MN4MN6MN3MNI2MD4MD2MI14MN9MN2MN3MNMN3M2N2M2NMN2MN2MI5MND13M2N2MN2MN26MN6MN8MN14MN13MN8MN6M2N4MN10MN2MN4M236H mismatches: 203 - insertions: 17 - deletions: 14
  • Rattus norvegicus

    Rattus norvegicus

    • Public DB hit
      GI:78486543
      NM_022590
    • Hit length
      2,254 bp
    • E Value
      0E0
    • BLAST Score
      2,058.3 bits
    • Similarity
      85.44%
    • Coverage
      87.81%
    • Alignment (schematic)

      SEQ ID NO 3
      87.81% cov
      NM_022590
      88.55% cov
    • Alignment Length
      2,019 bp
    • CIGAR string
      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 mismatches: 248 - insertions: 23 - deletions: 23
Occurrence
85 times in PatSeqDB
Tools
SEQ ID NO
4
Length
3,636
Sequence Type
DNA
Locations
Undetermined
Declared organism
Homo sapiens
Determined organism
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:299523249
      NM_174936
      1 of 4 hits reported for Homo sapiens.
    • Hit length
      3,731 bp
    • E Value
      0E0
    • BLAST Score
      6,715.5 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      NM_174936
      97.45% cov
    • Alignment Length
      3,636 bp
    • CIGAR string
      3636M mismatches: 0 - insertions: 0 - deletions: 0
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:297664824
      XM_002810777
    • Hit length
      3,779 bp
    • E Value
      0E0
    • BLAST Score
      6,119.1 bits
    • Similarity
      97.19%
    • Coverage
      99.67%
    • Alignment (schematic)

      SEQ ID NO 4
      99.67% cov
      XM_002810777
      95.63% cov
    • Alignment Length
      3,627 bp
    • CIGAR string
      32MN23MN22MN58MN24MN48MN26MN93M3D2MN14MD2M2D110MN41MN4MN37MN39MN46MN171MN2MN47MN23MN155MN105MN127MN38MN131MN46MN74MN99MN39MN16MN190MD2MI2MN28MN142MN159MN15MN7MN19MN4MN2MN25MN72MN34MN28MN21MN6MN2MN4MN24MN18MN9MN9MN28MN24MN8MN30MN2MN11MN54MN5MN24MN16MN79MN9MN6MN17MN36MN2M2N11MN61MN10MN10MN44MN3MIMD50MN9MN65MN39MN15MN53MN10MN20MN6MN7MD6MN21MN14MN19MN2MDM2D37MIMD53MN21MN69M12H mismatches: 86 - insertions: 3 - deletions: 13
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332231984
      XM_003265130
    • Hit length
      2,186 bp
    • E Value
      0E0
    • BLAST Score
      3,729.5 bits
    • Similarity
      97.48%
    • Coverage
      60.04%
    • Alignment (schematic)

      SEQ ID NO 4
      60.04% cov
      XM_003265130
      100% cov
    • Alignment Length
      2,186 bp
Occurrence
153 times in PatSeqDB
Tools
SEQ ID NO
5
Length
874
Sequence Type
DNA
Locations
Undetermined
Declared organism
Homo sapiens
Determined organism
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:48762945
      NM_000454
      1 of 10 hits reported for Homo sapiens.
    • Hit length
      981 bp
    • E Value
      0E0
    • BLAST Score
      1,615.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      NM_000454
      89.09% cov
    • Alignment Length
      874 bp
    • CIGAR string
      874M mismatches: 0 - insertions: 0 - deletions: 0
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332229451
      XM_003263853
      1 of 2 hits reported for Nomascus leucogenys.
    • Hit length
      823 bp
    • E Value
      0E0
    • BLAST Score
      1,312.2 bits
    • Similarity
      95.85%
    • Coverage
      92.68%
    • Alignment (schematic)

      SEQ ID NO 5
      92.68% cov
      XM_003263853
      99.03% cov
    • Alignment Length
      819 bp
  • Macaca fascicularis

    Macaca fascicularis

    • Public DB hit
      GI:84579182
      AB220492
    • Hit length
      2,039 bp
    • E Value
      0E0
    • BLAST Score
      1,135 bits
    • Similarity
      93.73%
    • Coverage
      87.41%
    • Alignment (schematic)

      SEQ ID NO 5
      87.41% cov
      AB220492
      36.88% cov
    • Alignment Length
      766 bp
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:197102619
      NM_001131969
    • Hit length
      665 bp
    • E Value
      0E0
    • BLAST Score
      1,000.2 bits
    • Similarity
      95.29%
    • Coverage
      71.85%
    • Alignment (schematic)

      SEQ ID NO 5
      71.85% cov
      NM_001131969
      95.49% cov
    • Alignment Length
      637 bp
Occurrence
87 times in PatSeqDB
Tools
SEQ ID NO
6
Length
1,631
Sequence Type
DNA
Locations
Undetermined
Declared organism
Homo sapiens
Determined organism
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:30223
      X56214
      1 of 10 hits reported for Homo sapiens.
    • Hit length
      1,631 bp
    • E Value
      0E0
    • BLAST Score
      3,013 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      X56214
      100% cov
    • Alignment Length
      1,631 bp
    • CIGAR string
      1631M mismatches: 0 - insertions: 0 - deletions: 0
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:297663040
      XM_002809936
    • Hit length
      2,021 bp
    • E Value
      0E0
    • BLAST Score
      2,723.1 bits
    • Similarity
      96.77%
    • Coverage
      99.82%
    • Alignment (schematic)

      SEQ ID NO 6
      99.82% cov
      XM_002809936
      81.05% cov
    • Alignment Length
      1,640 bp
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332219174
      XM_003258685
    • Hit length
      2,026 bp
    • E Value
      0E0
    • BLAST Score
      2,603 bits
    • Similarity
      95.49%
    • Coverage
      99.69%
    • Alignment (schematic)

      SEQ ID NO 6
      99.69% cov
      XM_003258685
      80.75% cov
    • Alignment Length
      1,639 bp
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:332810885
      XM_001170732
    • Hit length
      1,078 bp
    • E Value
      0E0
    • BLAST Score
      1,893.9 bits
    • Similarity
      98.78%
    • Coverage
      65.3%
    • Alignment (schematic)

      SEQ ID NO 6
      65.3% cov
      XM_001170732
      98.61% cov
    • Alignment Length
      1,066 bp
Occurrence
75 times in PatSeqDB
Tools
SEQ ID NO
7
Length
1,898
Sequence Type
DNA
Locations
Undetermined
Declared organism
Mus musculus
Determined organism
  • Mus musculus

    Mus musculus

    • Public DB hit
      GI:21594787
      BC031885
      1 of 6 hits reported for Mus musculus.
    • Hit length
      1,898 bp
    • E Value
      0E0
    • BLAST Score
      3,506.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      BC031885
      100% cov
    • Alignment Length
      1,898 bp
    • CIGAR string
      1898M mismatches: 0 - insertions: 0 - deletions: 0
  • Rattus norvegicus

    Rattus norvegicus

    • Public DB hit
      GI:25742860
      NM_172092
      1 of 5 hits reported for Rattus norvegicus.
    • Hit length
      1,875 bp
    • E Value
      0E0
    • BLAST Score
      2,649.2 bits
    • Similarity
      93.12%
    • Coverage
      95.42%
    • Alignment (schematic)

      SEQ ID NO 7
      95.42% cov
      NM_172092
      96.43% cov
    • Alignment Length
      1,818 bp
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:595785
      U14012
    • Hit length
      1,488 bp
    • E Value
      0E0
    • BLAST Score
      2,008.4 bits
    • Similarity
      91.54%
    • Coverage
      76.87%
    • Alignment (schematic)

      SEQ ID NO 7
      76.87% cov
      U14012
      98.05% cov
    • Alignment Length
      1,466 bp
  • Bos taurus

    Bos taurus

    • Public DB hit
      GI:329112594
      NM_001192414
      1 of 4 hits reported for Bos taurus.
    • Hit length
      1,768 bp
    • E Value
      0E0
    • BLAST Score
      1,358.4 bits
    • Similarity
      85.3%
    • Coverage
      69.81%
    • Alignment (schematic)

      SEQ ID NO 7
      69.81% cov
      NM_001192414
      74.77% cov
    • Alignment Length
      1,333 bp
  • Equus caballus

    Equus caballus

    • Public DB hit
      GI:194216539
      XM_001488449
    • Hit length
      1,449 bp
    • E Value
      0E0
    • BLAST Score
      1,334.4 bits
    • Similarity
      86.5%
    • Coverage
      64.12%
    • Alignment (schematic)

      SEQ ID NO 7
      64.12% cov
      XM_001488449
      83.99% cov
    • Alignment Length
      1,222 bp
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332266430
      XM_003282162
    • Hit length
      2,079 bp
    • E Value
      0E0
    • BLAST Score
      1,317.8 bits
    • Similarity
      85.23%
    • Coverage
      67.91%
    • Alignment (schematic)

      SEQ ID NO 7
      67.91% cov
      XM_003282162
      62.05% cov
    • Alignment Length
      1,300 bp
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:405189
      L20316
      1 of 2 hits reported for Homo sapiens.
    • Hit length
      2,034 bp
    • E Value
      0E0
    • BLAST Score
      1,315.9 bits
    • Similarity
      85.18%
    • Coverage
      68.02%
    • Alignment (schematic)

      SEQ ID NO 7
      68.02% cov
      L20316
      63.52% cov
    • Alignment Length
      1,302 bp
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:332849308
      XM_523746
    • Hit length
      1,973 bp
    • E Value
      0E0
    • BLAST Score
      1,308.5 bits
    • Similarity
      85.12%
    • Coverage
      67.97%
    • Alignment (schematic)

      SEQ ID NO 7
      67.97% cov
      XM_523746
      65.43% cov
    • Alignment Length
      1,304 bp
Occurrence
57 times in PatSeqDB
Tools
SEQ ID NO
8
Length
106,000
Sequence Type
DNA
Locations
Undetermined
Declared organism
Homo sapiens
Determined organism
Occurrence
57 times in PatSeqDB
Tools
SEQ ID NO
9
Length
2,034
Sequence Type
DNA
Locations
Undetermined
Declared organism
Homo sapiens
Determined organism
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:405189
      L20316
      1 of 5 hits reported for Homo sapiens.
    • Hit length
      2,034 bp
    • E Value
      0E0
    • BLAST Score
      3,757.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      L20316
      100% cov
    • Alignment Length
      2,034 bp
    • CIGAR string
      2034M mismatches: 0 - insertions: 0 - deletions: 0
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:332849308
      XM_523746
    • Hit length
      1,973 bp
    • E Value
      0E0
    • BLAST Score
      3,441.4 bits
    • Similarity
      98.81%
    • Coverage
      94.94%
    • Alignment (schematic)

      SEQ ID NO 9
      94.94% cov
      XM_523746
      97.97% cov
    • Alignment Length
      1,933 bp
    • CIGAR string
      103H12MN86MN5MN22MI52MN343MN24MN238MN242MN122MN23MN89MN187MN5MN11MN6MN4MN8MN88MN68MI69MN34MN129MN43M mismatches: 21 - insertions: 2 - deletions: 0
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332266430
      XM_003282162
    • Hit length
      2,079 bp
    • E Value
      0E0
    • BLAST Score
      3,120.1 bits
    • Similarity
      95.91%
    • Coverage
      94.69%
    • Alignment (schematic)

      SEQ ID NO 9
      94.69% cov
      XM_003282162
      92.69% cov
    • Alignment Length
      1,932 bp
    • CIGAR string
      108H7MN11MN9MN16M2N13MN22MN6MN2MN5MN5MN16MIN64MDMI46MN102MN152MN26MN38MN38MN8MN64MN18MN14MN77MN5MN19MN42MN150MN2MN10MN24MN55MN50MN23MN29MN23MN5MI3MD8MN17MN5MN14MN18MNMN11MN90MN9MN22MN12MN14MN13MNMN4MN5MN32MN41MN76MI3MN41MN32MD26MN8MN15MN9MIMD3MN2MN12MN6MI3MD3MN15MN3M2N14MN16MN5MN43M mismatches: 68 - insertions: 6 - deletions: 5
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:297702042
      XM_002827956
    • Hit length
      1,939 bp
    • E Value
      0E0
    • BLAST Score
      3,118.3 bits
    • Similarity
      95.82%
    • Coverage
      94.84%
    • Alignment (schematic)

      SEQ ID NO 9
      94.84% cov
      XM_002827956
      99.74% cov
    • Alignment Length
      1,936 bp
    • CIGAR string
      105H6MN3MN39MN46MN5MN22MI13MN6MN2MN41MDMI15MIM2I30MN6MN44MN46MN9MN5MN17MN5MN5MNMN2MN4MN3M2N6MN9M2N77MN26MN86MN26MN56MN14MN77MN8MN16MN135MN24MN46MN17MN52MN60MN23MN71MN5MN11MN20MN155M3N26MN20MNMN3MN29MN66MN47M2N5MIMN23MN72MN6MD3MI16MN4MN11MN2MN2MN12MN4M2N27M2N14MN16MN5MN43M mismatches: 72 - insertions: 7 - deletions: 2
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:297273854
      XM_001111894
    • Hit length
      1,915 bp
    • E Value
      0E0
    • BLAST Score
      2,856 bits
    • Similarity
      93.68%
    • Coverage
      93.81%
    • Alignment (schematic)

      SEQ ID NO 9
      93.81% cov
      XM_001111894
      99.79% cov
    • Alignment Length
      1,914 bp
    • CIGAR string
      105H8MNMN11MN6MI2MNMN14MNMN45M2N5MN22MIN56MN7MDMI11MN34MN42MN59MN2MN32MN101MN41MN5MN14MN9MN22MN32MN45MN11MN25MN14MN7MN15MN20MN32MN25MN24MN36MN73MN57MN2MN9M2N7MN16MN92MN7MN5MN5MN17MN3MN28MN14MN14MN8MN17MN40MN93MN2MN7MN30M3N10M2N14MN4MN5MN4MN5MN4MN3M2N5MN9MN8MN15MN13MN24MN19MN3MN29MN6MN5MIMN19M2N23MN10MN10MN4MN4MN14MN3MNMN5MN24MN12MNMN2MN4MN14MNMD2MIMN10MNMN7MDMNI12MNMN4MN7MNMNM2N3MN4MN17M21H mismatches: 112 - insertions: 6 - deletions: 3
  • Bos taurus

    Bos taurus

    • Public DB hit
      GI:297487319
      XM_002696114
      1 of 2 hits reported for Bos taurus.
    • Hit length
      1,904 bp
    • E Value
      0E0
    • BLAST Score
      1,576.3 bits
    • Similarity
      86.97%
    • Coverage
      69.42%
    • Alignment (schematic)

      SEQ ID NO 9
      69.42% cov
      XM_002696114
      73.79% cov
    • Alignment Length
      1,420 bp
    • CIGAR string
      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 mismatches: 162 - insertions: 8 - deletions: 15
  • Equus caballus

    Equus caballus

    • Public DB hit
      GI:194216539
      XM_001488449
    • Hit length
      1,449 bp
    • E Value
      0E0
    • BLAST Score
      1,559.7 bits
    • Similarity
      86.71%
    • Coverage
      69.22%
    • Alignment (schematic)

      SEQ ID NO 9
      69.22% cov
      XM_001488449
      98% cov
    • Alignment Length
      1,430 bp
    • CIGAR string
      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 mismatches: 158 - insertions: 22 - deletions: 10
  • Canis lupus familiaris

    Canis lupus familiaris

    • Public DB hit
      GI:73964754
      XM_540487
    • Hit length
      2,077 bp
    • E Value
      0E0
    • BLAST Score
      1,402.7 bits
    • Similarity
      86.53%
    • Coverage
      63.32%
    • Alignment (schematic)

      SEQ ID NO 9
      63.32% cov
      XM_540487
      61.68% cov
    • Alignment Length
      1,299 bp
    • CIGAR string
      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 mismatches: 146 - insertions: 11 - deletions: 18
Occurrence
123 times in PatSeqDB
Tools
SEQ ID NO
10
Length
2,439
Sequence Type
DNA
Locations
Undetermined
Declared organism
Homo sapiens
Determined organism
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:22506630
      AB048286
      1 of 8 hits reported for Homo sapiens.
    • Hit length
      2,439 bp
    • E Value
      0E0
    • BLAST Score
      4,505.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      AB048286
      100% cov
    • Alignment Length
      2,439 bp
    • CIGAR string
      2439M mismatches: 0 - insertions: 0 - deletions: 0
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:332837266
      XM_522113
      1 of 2 hits reported for Pan troglodytes.
    • Hit length
      2,455 bp
    • E Value
      0E0
    • BLAST Score
      4,381.4 bits
    • Similarity
      99.34%
    • Coverage
      99.26%
    • Alignment (schematic)

      SEQ ID NO 10
      99.26% cov
      XM_522113
      98.57% cov
    • Alignment Length
      2,421 bp
    • CIGAR string
      7MD12MN67MN22MN570MN260MN35MN176MN249MN60MN161MN29MN125MN150MN232MN35MN215M18H mismatches: 15 - insertions: 0 - deletions: 1
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:297689752
      XM_002822258
      1 of 2 hits reported for Pongo abelii.
    • Hit length
      2,455 bp
    • E Value
      0E0
    • BLAST Score
      4,167.2 bits
    • Similarity
      97.73%
    • Coverage
      99.26%
    • Alignment (schematic)

      SEQ ID NO 10
      99.26% cov
      XM_002822258
      98.62% cov
    • Alignment Length
      2,426 bp
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:297268783
      XM_002808083
    • Hit length
      2,743 bp
    • E Value
      0E0
    • BLAST Score
      3,853.2 bits
    • Similarity
      96.16%
    • Coverage
      96.56%
    • Alignment (schematic)

      SEQ ID NO 10
      96.56% cov
      XM_002808083
      86.18% cov
    • Alignment Length
      2,371 bp
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332211275
      XM_003254698
    • Hit length
      2,035 bp
    • E Value
      0E0
    • BLAST Score
      3,476.5 bits
    • Similarity
      98.1%
    • Coverage
      81.75%
    • Alignment (schematic)

      SEQ ID NO 10
      81.75% cov
      XM_003254698
      98.23% cov
    • Alignment Length
      1,999 bp
Occurrence
84 times in PatSeqDB
Tools

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