Bacterial Rnase P Proteins And Their Use In Identifying Antibacterial Compounds

Data obtained from: EMBL-EBI Pat DDBJ Pat USPTO Fulltext NCBI GenBank
113 sequences found in this patent (in total)

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Displaying 1 - 10 of 113 sequences

SEQ ID NO
Length
Sequence Type
Locations
Declared organism
Determined organism
Occurrence
Tools
SEQ ID NO
1
Length
417
Sequence Type
nucleotide
Locations
Detailed Description, Drawings, Summary
Declared organism
Streptococcus mutans
Determined organism
  • Streptococcus mutans UA159

    Streptococcus mutans UA159

    • Public DB hit
      GI:24378526
      AE014133
    • Hit length
      2,030,921 bp
    • E Value
      0E0
    • BLAST Score
      771.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      AE014133
      0.02% cov
    • Alignment Length
      417 bp
    • CIGAR string
      417M mismatches: 0 - insertions: 0 - deletions: 0
  • Streptococcus mutans NN2025

    Streptococcus mutans NN2025

    • Public DB hit
      GI:254996425
      AP010655
    • Hit length
      2,013,587 bp
    • E Value
      0E0
    • BLAST Score
      765.6 bits
    • Similarity
      99.76%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      AP010655
      0.02% cov
    • Alignment Length
      417 bp
    • CIGAR string
      46MN370M mismatches: 1 - insertions: 0 - deletions: 0
Occurrence
3 times in PatSeqDB
Tools
SEQ ID NO
2
Length
477
Sequence Type
nucleotide
Locations
Detailed Description, Drawings, Summary
Declared organism
Klebsiella pneumoniae
Determined organism
  • Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044

    Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044

    • Public DB hit
      GI:57158257
      AP006725
    • Hit length
      5,248,520 bp
    • E Value
      0E0
    • BLAST Score
      882 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      AP006725
      0.01% cov
    • Alignment Length
      477 bp
    • CIGAR string
      477M mismatches: 0 - insertions: 0 - deletions: 0
  • Klebsiella pneumoniae subsp. pneumoniae MGH 78578

    Klebsiella pneumoniae subsp. pneumoniae MGH 78578

    • Public DB hit
      GI:150953431
      CP000647
    • Hit length
      5,315,120 bp
    • E Value
      0E0
    • BLAST Score
      882 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      CP000647
      0.01% cov
    • Alignment Length
      477 bp
    • CIGAR string
      477M mismatches: 0 - insertions: 0 - deletions: 0
  • Klebsiella variicola At-22

    Klebsiella variicola At-22

    • Public DB hit
      GI:288887617
      CP001891
    • Hit length
      5,458,505 bp
    • E Value
      0E0
    • BLAST Score
      876.4 bits
    • Similarity
      99.79%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      CP001891
      0.01% cov
    • Alignment Length
      477 bp
    • CIGAR string
      431MN45M mismatches: 1 - insertions: 0 - deletions: 0
  • Klebsiella pneumoniae 342

    Klebsiella pneumoniae 342

    • Public DB hit
      GI:206564770
      CP000964
    • Hit length
      5,641,239 bp
    • E Value
      0E0
    • BLAST Score
      876.4 bits
    • Similarity
      99.79%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      CP000964
      0.01% cov
    • Alignment Length
      477 bp
  • Enterobacter aerogenes KCTC 2190

    Enterobacter aerogenes KCTC 2190

    • Public DB hit
      GI:334732565
      CP002824
    • Hit length
      5,280,350 bp
    • E Value
      0E0
    • BLAST Score
      776.7 bits
    • Similarity
      96.03%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      CP002824
      0.01% cov
    • Alignment Length
      479 bp
  • Escherichia coli UMNK88

    Escherichia coli UMNK88

    • Public DB hit
      GI:332341332
      CP002729
    • Hit length
      5,186,416 bp
    • E Value
      0E0
    • BLAST Score
      726.9 bits
    • Similarity
      94.14%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      CP002729
      0.01% cov
    • Alignment Length
      478 bp
  • Escherichia coli KO11FL

    Escherichia coli KO11FL

    • Public DB hit
      GI:323376397
      CP002516
    • Hit length
      4,920,168 bp
    • E Value
      0E0
    • BLAST Score
      726.9 bits
    • Similarity
      94.14%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      CP002516
      0.01% cov
    • Alignment Length
      478 bp
  • Escherichia coli DH1

    Escherichia coli DH1

    • Public DB hit
      GI:315134697
      AP012030
      1 of 2 hits reported for Escherichia coli DH1.
    • Hit length
      4,621,430 bp
    • E Value
      0E0
    • BLAST Score
      726.9 bits
    • Similarity
      94.14%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      AP012030
      0.01% cov
    • Alignment Length
      478 bp
  • Escherichia coli W

    Escherichia coli W

    • Public DB hit
      GI:315059226
      CP002185
    • Hit length
      4,900,968 bp
    • E Value
      0E0
    • BLAST Score
      726.9 bits
    • Similarity
      94.14%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      CP002185
      0.01% cov
    • Alignment Length
      478 bp
  • Escherichia coli BL21(DE3)

    Escherichia coli BL21(DE3)

    • Public DB hit
      GI:313848522
      AM946981
      1 of 2 hits reported for Escherichia coli BL21(DE3).
    • Hit length
      4,558,947 bp
    • E Value
      0E0
    • BLAST Score
      726.9 bits
    • Similarity
      94.14%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      AM946981
      0.01% cov
    • Alignment Length
      478 bp
  • Escherichia coli ETEC H10407

    Escherichia coli ETEC H10407

    • Public DB hit
      GI:309700213
      FN649414
    • Hit length
      5,153,435 bp
    • E Value
      0E0
    • BLAST Score
      726.9 bits
    • Similarity
      94.14%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      FN649414
      0.01% cov
    • Alignment Length
      478 bp
  • Escherichia coli UM146

    Escherichia coli UM146

    • Public DB hit
      GI:307625127
      CP002167
    • Hit length
      4,993,013 bp
    • E Value
      0E0
    • BLAST Score
      726.9 bits
    • Similarity
      94.14%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      CP002167
      0.01% cov
    • Alignment Length
      478 bp
  • Escherichia coli ABU 83972

    Escherichia coli ABU 83972

    • Public DB hit
      GI:307551844
      CP001671
    • Hit length
      5,131,397 bp
    • E Value
      0E0
    • BLAST Score
      726.9 bits
    • Similarity
      94.14%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      CP001671
      0.01% cov
    • Alignment Length
      478 bp
  • Escherichia coli IHE3034

    Escherichia coli IHE3034

    • Public DB hit
      GI:294489418
      CP001969
    • Hit length
      5,108,383 bp
    • E Value
      0E0
    • BLAST Score
      726.9 bits
    • Similarity
      94.14%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      CP001969
      0.01% cov
    • Alignment Length
      478 bp
  • Escherichia coli O55:H7 str. CB9615

    Escherichia coli O55:H7 str. CB9615

    • Public DB hit
      GI:290760697
      CP001846
    • Hit length
      5,386,352 bp
    • E Value
      0E0
    • BLAST Score
      726.9 bits
    • Similarity
      94.14%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      CP001846
      0.01% cov
    • Alignment Length
      478 bp
  • Escherichia coli 042

    Escherichia coli 042

    • Public DB hit
      GI:284919779
      FN554766
    • Hit length
      5,241,977 bp
    • E Value
      0E0
    • BLAST Score
      726.9 bits
    • Similarity
      94.14%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      FN554766
      0.01% cov
    • Alignment Length
      478 bp
  • Escherichia coli O111:H- str. 11128

    Escherichia coli O111:H- str. 11128

    • Public DB hit
      GI:257762509
      AP010960
    • Hit length
      5,371,077 bp
    • E Value
      0E0
    • BLAST Score
      726.9 bits
    • Similarity
      94.14%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      AP010960
      0.01% cov
    • Alignment Length
      478 bp
  • Escherichia coli O103:H2 str. 12009

    Escherichia coli O103:H2 str. 12009

    • Public DB hit
      GI:257757386
      AP010958
    • Hit length
      5,449,314 bp
    • E Value
      0E0
    • BLAST Score
      726.9 bits
    • Similarity
      94.14%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      AP010958
      0.01% cov
    • Alignment Length
      478 bp
  • Escherichia coli O26:H11 str. 11368

    Escherichia coli O26:H11 str. 11368

    • Public DB hit
      GI:257751862
      AP010953
    • Hit length
      5,697,240 bp
    • E Value
      0E0
    • BLAST Score
      726.9 bits
    • Similarity
      94.14%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      AP010953
      0.01% cov
    • Alignment Length
      478 bp
  • Escherichia coli B str. REL606

    Escherichia coli B str. REL606

    • Public DB hit
      GI:253972022
      CP000819
    • Hit length
      4,629,812 bp
    • E Value
      0E0
    • BLAST Score
      726.9 bits
    • Similarity
      94.14%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      CP000819
      0.01% cov
    • Alignment Length
      478 bp
  • Escherichia coli 'BL21-Gold(DE3)pLysS AG'

    Escherichia coli 'BL21-Gold(DE3)pLysS AG'

    • Public DB hit
      GI:253322479
      CP001665
    • Hit length
      4,570,938 bp
    • E Value
      0E0
    • BLAST Score
      726.9 bits
    • Similarity
      94.14%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      CP001665
      0.01% cov
    • Alignment Length
      478 bp
  • Escherichia coli BW2952

    Escherichia coli BW2952

    • Public DB hit
      GI:238859724
      CP001396
    • Hit length
      4,578,159 bp
    • E Value
      0E0
    • BLAST Score
      726.9 bits
    • Similarity
      94.14%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      CP001396
      0.01% cov
    • Alignment Length
      478 bp
  • Escherichia coli UMN026

    Escherichia coli UMN026

    • Public DB hit
      GI:218430358
      CU928163
    • Hit length
      5,202,090 bp
    • E Value
      0E0
    • BLAST Score
      726.9 bits
    • Similarity
      94.14%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      CU928163
      0.01% cov
    • Alignment Length
      478 bp
Occurrence
3 times in PatSeqDB
Tools
SEQ ID NO
3
Length
455
Sequence Type
nucleotide
Locations
Detailed Description, Drawings, Summary
Declared organism
Salmonella
Determined organism
Occurrence
3 times in PatSeqDB
Tools
SEQ ID NO
4
Length
528
Sequence Type
nucleotide
Locations
Detailed Description, Drawings, Summary
Declared organism
Pseudomonas aeruginosa
Determined organism
  • Pseudomonas aeruginosa UCBPP-PA14

    Pseudomonas aeruginosa UCBPP-PA14

    • Public DB hit
      GI:115583796
      CP000438
    • Hit length
      6,537,648 bp
    • E Value
      0E0
    • BLAST Score
      976.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      CP000438
      0.01% cov
    • Alignment Length
      528 bp
    • CIGAR string
      528M mismatches: 0 - insertions: 0 - deletions: 0
  • Pseudomonas aeruginosa PAO1

    Pseudomonas aeruginosa PAO1

    • Public DB hit
      GI:110227054
      AE004091
    • Hit length
      6,264,404 bp
    • E Value
      0E0
    • BLAST Score
      976.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      AE004091
      0.01% cov
    • Alignment Length
      528 bp
    • CIGAR string
      528M mismatches: 0 - insertions: 0 - deletions: 0
  • Pseudomonas aeruginosa LESB58

    Pseudomonas aeruginosa LESB58

    • Public DB hit
      GI:218768969
      FM209186
    • Hit length
      6,601,757 bp
    • E Value
      0E0
    • BLAST Score
      970.6 bits
    • Similarity
      99.81%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      FM209186
      0.01% cov
    • Alignment Length
      528 bp
    • CIGAR string
      136MN391M mismatches: 1 - insertions: 0 - deletions: 0
  • Pseudomonas aeruginosa PA7

    Pseudomonas aeruginosa PA7

    • Public DB hit
      GI:150958624
      CP000744
    • Hit length
      6,588,339 bp
    • E Value
      0E0
    • BLAST Score
      876.4 bits
    • Similarity
      96.59%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      CP000744
      0.01% cov
    • Alignment Length
      528 bp
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:49077255
      AY657380
    • Hit length
      408 bp
    • E Value
      0E0
    • BLAST Score
      747.2 bits
    • Similarity
      100%
    • Coverage
      76.52%
    • Alignment (schematic)

      SEQ ID NO 4
      76.52% cov
      AY657380
      99.02% cov
    • Alignment Length
      404 bp
  • Pseudomonas mendocina ymp

    Pseudomonas mendocina ymp

    • Public DB hit
      GI:145573243
      CP000680
    • Hit length
      5,072,807 bp
    • E Value
      2.21E-93
    • BLAST Score
      352 bits
    • Similarity
      83.09%
    • Coverage
      75.38%
    • Alignment (schematic)

      SEQ ID NO 4
      75.38% cov
      CP000680
      0.01% cov
    • Alignment Length
      408 bp
  • Pseudomonas stutzeri A1501

    Pseudomonas stutzeri A1501

    • Public DB hit
      GI:145568602
      CP000304
    • Hit length
      4,567,418 bp
    • E Value
      8.12E-78
    • BLAST Score
      300.3 bits
    • Similarity
      80.48%
    • Coverage
      77.08%
    • Alignment (schematic)

      SEQ ID NO 4
      77.08% cov
      CP000304
      0.01% cov
    • Alignment Length
      415 bp
  • Pseudomonas stutzeri DSM 4166

    Pseudomonas stutzeri DSM 4166

    • Public DB hit
      GI:327478612
      CP002622
    • Hit length
      4,689,946 bp
    • E Value
      3.78E-76
    • BLAST Score
      294.7 bits
    • Similarity
      80.24%
    • Coverage
      77.08%
    • Alignment (schematic)

      SEQ ID NO 4
      77.08% cov
      CP002622
      0.01% cov
    • Alignment Length
      415 bp
Occurrence
4 times in PatSeqDB
Tools
SEQ ID NO
5
Length
510
Sequence Type
nucleotide
Locations
Detailed Description, Drawings, Summary
Declared organism
Corynebacterium
Determined organism
  • Corynebacterium diphtheriae

    Corynebacterium diphtheriae

    • Public DB hit
      GI:38201128
      BX248361
    • Hit length
      53,793 bp
    • E Value
      0E0
    • BLAST Score
      926.3 bits
    • Similarity
      99.41%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      BX248361
      0.95% cov
    • Alignment Length
      510 bp
    • CIGAR string
      80MN285MN24MN118M mismatches: 3 - insertions: 0 - deletions: 0
Occurrence
4 times in PatSeqDB
Tools
SEQ ID NO
6
Length
504
Sequence Type
nucleotide
Locations
Detailed Description, Drawings, Summary
Declared organism
Chlamydia trachomatis
Determined organism
  • Chlamydia muridarum str. Nigg

    Chlamydia muridarum str. Nigg

    • Public DB hit
      GI:29251571
      AE002160
    • Hit length
      1,072,950 bp
    • E Value
      0E0
    • BLAST Score
      931.8 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      AE002160
      0.05% cov
    • Alignment Length
      504 bp
    • CIGAR string
      504M mismatches: 0 - insertions: 0 - deletions: 0
  • Chlamydia trachomatis G/11074

    Chlamydia trachomatis G/11074

    • Public DB hit
      GI:296437374
      CP001889
    • Hit length
      1,042,875 bp
    • E Value
      9.85E-87
    • BLAST Score
      329.8 bits
    • Similarity
      79.22%
    • Coverage
      99.01%
    • Alignment (schematic)

      SEQ ID NO 6
      99.01% cov
      CP001889
      0.05% cov
    • Alignment Length
      510 bp
    • CIGAR string
      3H8MN14MN5MN11MN2MN20MN7MD3MI3MN3MDMI10MN7MI2MD3MN2M2N2MN22MN2MN3MNM3N3MNM2NMN7MNMN5MNM2N8M2NMN5MN16MN12M2N7MN2MD3MI8MN5MN5MN8MN5M2NMN2MN17MN5MN2MN11MNM2N5MN4MI2MDMN5M2DN2MN2M2NMN2MINMI5MI4MNMD8MNM2N2MN6MN3M2N2MN2MN11MN4M3DMN5MDM3N2MNM2NMNM4D3MDMI3MI2NMI36M2H mismatches: 78 - insertions: 11 - deletions: 17
  • Chlamydia trachomatis G/9301

    Chlamydia trachomatis G/9301

    • Public DB hit
      GI:297139873
      CP001930
    • Hit length
      1,042,811 bp
    • E Value
      4.58E-85
    • BLAST Score
      324.3 bits
    • Similarity
      79.02%
    • Coverage
      99.01%
    • Alignment (schematic)

      SEQ ID NO 6
      99.01% cov
      CP001930
      0.05% cov
    • Alignment Length
      510 bp
    • CIGAR string
      3H8MN14MN5MN11MN2MN20MN7MD3MI3MN3MDMI10MN7MI2MD3MN2M2N2MN22MN2MN3MNM3N3MNM2NMN7MNMN5MNM2N8M2NMN5MN16MN12M2N7MN2MD3MI8MN5MN5MN8MN5M2NMN2MN17MN5MN2MN11MNM2N5MN2MIMN2MDMN5M2DN2MN2M2NMN2MINMI5MI4MNMD8MNM2N2MN6MN3M2N2MN2MN11MN4M3DMN5MDM3N2MNM2NMNM4D3MDMI3MI2NMI36M2H mismatches: 79 - insertions: 11 - deletions: 17
  • Chlamydia trachomatis G/9768

    Chlamydia trachomatis G/9768

    • Public DB hit
      GI:296435514
      CP001887
    • Hit length
      1,042,810 bp
    • E Value
      4.58E-85
    • BLAST Score
      324.3 bits
    • Similarity
      79.02%
    • Coverage
      99.01%
    • Alignment (schematic)

      SEQ ID NO 6
      99.01% cov
      CP001887
      0.05% cov
    • Alignment Length
      510 bp
  • Chlamydia trachomatis D-LC

    Chlamydia trachomatis D-LC

    • Public DB hit
      GI:297749010
      CP002054
    • Hit length
      1,042,520 bp
    • E Value
      2.13E-83
    • BLAST Score
      318.7 bits
    • Similarity
      78.92%
    • Coverage
      99.6%
    • Alignment (schematic)

      SEQ ID NO 6
      99.6% cov
      CP002054
      0.05% cov
    • Alignment Length
      517 bp
  • Chlamydia trachomatis D-EC

    Chlamydia trachomatis D-EC

    • Public DB hit
      GI:297748130
      CP002052
    • Hit length
      1,042,522 bp
    • E Value
      2.13E-83
    • BLAST Score
      318.7 bits
    • Similarity
      78.92%
    • Coverage
      99.6%
    • Alignment (schematic)

      SEQ ID NO 6
      99.6% cov
      CP002052
      0.05% cov
    • Alignment Length
      517 bp
  • Chlamydia trachomatis G/11222

    Chlamydia trachomatis G/11222

    • Public DB hit
      GI:296436438
      CP001888
    • Hit length
      1,042,354 bp
    • E Value
      2.13E-83
    • BLAST Score
      318.7 bits
    • Similarity
      78.92%
    • Coverage
      99.6%
    • Alignment (schematic)

      SEQ ID NO 6
      99.6% cov
      CP001888
      0.05% cov
    • Alignment Length
      517 bp
  • Chlamydia trachomatis B/Jali20/OT

    Chlamydia trachomatis B/Jali20/OT

    • Public DB hit
      GI:231273667
      FM872308
    • Hit length
      1,044,352 bp
    • E Value
      2.13E-83
    • BLAST Score
      318.7 bits
    • Similarity
      78.83%
    • Coverage
      99.6%
    • Alignment (schematic)

      SEQ ID NO 6
      99.6% cov
      FM872308
      0.05% cov
    • Alignment Length
      515 bp
  • Chlamydia trachomatis B/TZ1A828/OT

    Chlamydia trachomatis B/TZ1A828/OT

    • Public DB hit
      GI:231272648
      FM872307
    • Hit length
      1,044,282 bp
    • E Value
      2.13E-83
    • BLAST Score
      318.7 bits
    • Similarity
      78.83%
    • Coverage
      99.6%
    • Alignment (schematic)

      SEQ ID NO 6
      99.6% cov
      FM872307
      0.05% cov
    • Alignment Length
      515 bp
  • Chlamydia trachomatis A/HAR-13

    Chlamydia trachomatis A/HAR-13

    • Public DB hit
      GI:76167241
      CP000051
    • Hit length
      1,044,459 bp
    • E Value
      2.13E-83
    • BLAST Score
      318.7 bits
    • Similarity
      78.83%
    • Coverage
      99.6%
    • Alignment (schematic)

      SEQ ID NO 6
      99.6% cov
      CP000051
      0.05% cov
    • Alignment Length
      515 bp
  • Chlamydia trachomatis D/UW-3/CX

    Chlamydia trachomatis D/UW-3/CX

    • Public DB hit
      GI:12057206
      AE001273
    • Hit length
      1,042,519 bp
    • E Value
      2.13E-83
    • BLAST Score
      318.7 bits
    • Similarity
      78.92%
    • Coverage
      99.6%
    • Alignment (schematic)

      SEQ ID NO 6
      99.6% cov
      AE001273
      0.05% cov
    • Alignment Length
      517 bp
  • Chlamydia trachomatis L2b/UCH-1/proctitis

    Chlamydia trachomatis L2b/UCH-1/proctitis

    • Public DB hit
      GI:165930836
      AM884177
    • Hit length
      1,038,869 bp
    • E Value
      9.92E-82
    • BLAST Score
      313.2 bits
    • Similarity
      78.68%
    • Coverage
      99.6%
    • Alignment (schematic)

      SEQ ID NO 6
      99.6% cov
      AM884177
      0.05% cov
    • Alignment Length
      516 bp
  • Chlamydia trachomatis 434/Bu

    Chlamydia trachomatis 434/Bu

    • Public DB hit
      GI:165929961
      AM884176
    • Hit length
      1,038,842 bp
    • E Value
      9.92E-82
    • BLAST Score
      313.2 bits
    • Similarity
      78.68%
    • Coverage
      99.6%
    • Alignment (schematic)

      SEQ ID NO 6
      99.6% cov
      AM884176
      0.05% cov
    • Alignment Length
      516 bp
Occurrence
4 times in PatSeqDB
Tools
SEQ ID NO
7
Length
492
Sequence Type
nucleotide
Locations
Detailed Description, Drawings, Summary
Declared organism
Vibrio cholerae
Determined organism
  • Vibrio cholerae MJ-1236

    Vibrio cholerae MJ-1236

    • Public DB hit
      GI:229368777
      CP001485
    • Hit length
      3,149,584 bp
    • E Value
      0E0
    • BLAST Score
      909.7 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      CP001485
      0.02% cov
    • Alignment Length
      492 bp
    • CIGAR string
      492M mismatches: 0 - insertions: 0 - deletions: 0
  • Vibrio cholerae O395

    Vibrio cholerae O395

    • Public DB hit
      GI:227011820
      CP001235
      1 of 2 hits reported for Vibrio cholerae O395.
    • Hit length
      3,024,078 bp
    • E Value
      0E0
    • BLAST Score
      909.7 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      CP001235
      0.02% cov
    • Alignment Length
      492 bp
    • CIGAR string
      492M mismatches: 0 - insertions: 0 - deletions: 0
  • Vibrio cholerae M66-2

    Vibrio cholerae M66-2

    • Public DB hit
      GI:227008125
      CP001233
    • Hit length
      2,892,523 bp
    • E Value
      0E0
    • BLAST Score
      909.7 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      CP001233
      0.02% cov
    • Alignment Length
      492 bp
    • CIGAR string
      492M mismatches: 0 - insertions: 0 - deletions: 0
  • Vibrio cholerae O1 biovar El Tor str. N16961

    Vibrio cholerae O1 biovar El Tor str. N16961

    • Public DB hit
      GI:12057212
      AE003852
    • Hit length
      2,961,149 bp
    • E Value
      0E0
    • BLAST Score
      909.7 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      AE003852
      0.02% cov
    • Alignment Length
      492 bp
  • Vibrio cholerae LMA3984-4

    Vibrio cholerae LMA3984-4

    • Public DB hit
      GI:327482915
      CP002555
    • Hit length
      2,791,729 bp
    • E Value
      0E0
    • BLAST Score
      894.9 bits
    • Similarity
      99.59%
    • Coverage
      99.59%
    • Alignment (schematic)

      SEQ ID NO 7
      99.59% cov
      CP002555
      0.02% cov
    • Alignment Length
      490 bp
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:109703123
      DQ772774
    • Hit length
      357 bp
    • E Value
      0E0
    • BLAST Score
      654.8 bits
    • Similarity
      100%
    • Coverage
      71.95%
    • Alignment (schematic)

      SEQ ID NO 7
      71.95% cov
      DQ772774
      99.16% cov
    • Alignment Length
      354 bp
  • Vibrio furnissii NCTC 11218

    Vibrio furnissii NCTC 11218

    • Public DB hit
      GI:315178329
      CP002377
    • Hit length
      3,294,546 bp
    • E Value
      3.26E-126
    • BLAST Score
      460.9 bits
    • Similarity
      83.9%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      CP002377
      0.01% cov
    • Alignment Length
      503 bp
  • Vibrio vulnificus CMCP6

    Vibrio vulnificus CMCP6

    • Public DB hit
      GI:319998996
      AE016795
    • Hit length
      3,281,866 bp
    • E Value
      3.31E-116
    • BLAST Score
      427.7 bits
    • Similarity
      84.86%
    • Coverage
      87.2%
    • Alignment (schematic)

      SEQ ID NO 7
      87.2% cov
      AE016795
      0.01% cov
    • Alignment Length
      436 bp
  • Vibrio vulnificus MO6-24/O

    Vibrio vulnificus MO6-24/O

    • Public DB hit
      GI:319930158
      CP002469
    • Hit length
      3,194,232 bp
    • E Value
      3.31E-116
    • BLAST Score
      427.7 bits
    • Similarity
      84.86%
    • Coverage
      87.2%
    • Alignment (schematic)

      SEQ ID NO 7
      87.2% cov
      CP002469
      0.01% cov
    • Alignment Length
      436 bp
  • Vibrio vulnificus YJ016

    Vibrio vulnificus YJ016

    • Public DB hit
      GI:37509034
      BA000037
    • Hit length
      3,354,505 bp
    • E Value
      3.31E-116
    • BLAST Score
      427.7 bits
    • Similarity
      84.86%
    • Coverage
      87.2%
    • Alignment (schematic)

      SEQ ID NO 7
      87.2% cov
      BA000037
      0.01% cov
    • Alignment Length
      436 bp
  • Vibrio sp. Ex25

    Vibrio sp. Ex25

    • Public DB hit
      GI:262335977
      CP001805
    • Hit length
      3,259,580 bp
    • E Value
      5.58E-109
    • BLAST Score
      403.7 bits
    • Similarity
      83.48%
    • Coverage
      88.82%
    • Alignment (schematic)

      SEQ ID NO 7
      88.82% cov
      CP001805
      0.01% cov
    • Alignment Length
      442 bp
  • Vibrio anguillarum 775

    Vibrio anguillarum 775

    • Public DB hit
      GI:335340310
      CP002284
    • Hit length
      3,063,912 bp
    • E Value
      5.7E-94
    • BLAST Score
      353.8 bits
    • Similarity
      81.64%
    • Coverage
      89.63%
    • Alignment (schematic)

      SEQ ID NO 7
      89.63% cov
      CP002284
      0.01% cov
    • Alignment Length
      452 bp
  • Vibrio splendidus LGP32

    Vibrio splendidus LGP32

    • Public DB hit
      GI:223587976
      FM954972
    • Hit length
      3,299,303 bp
    • E Value
      7.42E-88
    • BLAST Score
      333.5 bits
    • Similarity
      80.12%
    • Coverage
      95.73%
    • Alignment (schematic)

      SEQ ID NO 7
      95.73% cov
      FM954972
      0.01% cov
    • Alignment Length
      488 bp
Occurrence
4 times in PatSeqDB
Tools
SEQ ID NO
8
Length
492
Sequence Type
nucleotide
Locations
Detailed Description, Drawings, Summary
Declared organism
Neisseria gonorrhoea
Determined organism
  • Neisseria gonorrhoeae TCDC-NG08107

    Neisseria gonorrhoeae TCDC-NG08107

    • Public DB hit
      GI:317163438
      CP002440
    • Hit length
      2,154,835 bp
    • E Value
      0E0
    • BLAST Score
      909.7 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      CP002440
      0.02% cov
    • Alignment Length
      492 bp
    • CIGAR string
      492M mismatches: 0 - insertions: 0 - deletions: 0
  • Neisseria gonorrhoeae NCCP11945

    Neisseria gonorrhoeae NCCP11945

    • Public DB hit
      GI:193932879
      CP001050
    • Hit length
      2,232,025 bp
    • E Value
      0E0
    • BLAST Score
      909.7 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      CP001050
      0.02% cov
    • Alignment Length
      492 bp
    • CIGAR string
      492M mismatches: 0 - insertions: 0 - deletions: 0
  • Neisseria gonorrhoeae FA 1090

    Neisseria gonorrhoeae FA 1090

    • Public DB hit
      GI:59717368
      AE004969
    • Hit length
      2,153,922 bp
    • E Value
      0E0
    • BLAST Score
      909.7 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      AE004969
      0.02% cov
    • Alignment Length
      492 bp
    • CIGAR string
      492M mismatches: 0 - insertions: 0 - deletions: 0
  • Neisseria meningitidis 8013

    Neisseria meningitidis 8013

    • Public DB hit
      GI:261391559
      FM999788
    • Hit length
      2,277,550 bp
    • E Value
      0E0
    • BLAST Score
      837.7 bits
    • Similarity
      97.36%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      FM999788
      0.02% cov
    • Alignment Length
      492 bp
  • Neisseria meningitidis alpha14

    Neisseria meningitidis alpha14

    • Public DB hit
      GI:254667570
      AM889136
    • Hit length
      2,145,295 bp
    • E Value
      0E0
    • BLAST Score
      837.7 bits
    • Similarity
      97.36%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      AM889136
      0.02% cov
    • Alignment Length
      492 bp
  • Neisseria meningitidis WUE 2594

    Neisseria meningitidis WUE 2594

    • Public DB hit
      GI:319409534
      FR774048
    • Hit length
      2,227,255 bp
    • E Value
      0E0
    • BLAST Score
      819.2 bits
    • Similarity
      96.75%
    • Coverage
      99.8%
    • Alignment (schematic)

      SEQ ID NO 8
      99.8% cov
      FR774048
      0.02% cov
    • Alignment Length
      492 bp
  • Neisseria meningitidis Z2491

    Neisseria meningitidis Z2491

    • Public DB hit
      GI:30407145
      AL157959
    • Hit length
      2,184,406 bp
    • E Value
      0E0
    • BLAST Score
      819.2 bits
    • Similarity
      96.75%
    • Coverage
      99.8%
    • Alignment (schematic)

      SEQ ID NO 8
      99.8% cov
      AL157959
      0.02% cov
    • Alignment Length
      492 bp
  • Neisseria meningitidis NZ-05/33

    Neisseria meningitidis NZ-05/33

    • Public DB hit
      GI:325207054
      CP002424
    • Hit length
      2,248,966 bp
    • E Value
      0E0
    • BLAST Score
      815.5 bits
    • Similarity
      96.55%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      CP002424
      0.02% cov
    • Alignment Length
      493 bp
  • Neisseria meningitidis M01-240149

    Neisseria meningitidis M01-240149

    • Public DB hit
      GI:325201197
      CP002421
    • Hit length
      2,223,518 bp
    • E Value
      0E0
    • BLAST Score
      815.5 bits
    • Similarity
      96.55%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      CP002421
      0.02% cov
    • Alignment Length
      493 bp
  • Neisseria meningitidis M04-240196

    Neisseria meningitidis M04-240196

    • Public DB hit
      GI:325205106
      CP002423
    • Hit length
      2,250,449 bp
    • E Value
      0E0
    • BLAST Score
      813.6 bits
    • Similarity
      96.54%
    • Coverage
      99.8%
    • Alignment (schematic)

      SEQ ID NO 8
      99.8% cov
      CP002423
      0.02% cov
    • Alignment Length
      491 bp
  • Neisseria meningitidis H44/76

    Neisseria meningitidis H44/76

    • Public DB hit
      GI:325199235
      CP002420
    • Hit length
      2,240,883 bp
    • E Value
      0E0
    • BLAST Score
      813.6 bits
    • Similarity
      96.54%
    • Coverage
      99.8%
    • Alignment (schematic)

      SEQ ID NO 8
      99.8% cov
      CP002420
      0.02% cov
    • Alignment Length
      491 bp
  • Neisseria meningitidis alpha710

    Neisseria meningitidis alpha710

    • Public DB hit
      GI:308388224
      CP001561
    • Hit length
      2,242,947 bp
    • E Value
      0E0
    • BLAST Score
      813.6 bits
    • Similarity
      96.54%
    • Coverage
      99.8%
    • Alignment (schematic)

      SEQ ID NO 8
      99.8% cov
      CP001561
      0.02% cov
    • Alignment Length
      492 bp
  • Neisseria meningitidis MC58

    Neisseria meningitidis MC58

    • Public DB hit
      GI:66731897
      AE002098
    • Hit length
      2,272,360 bp
    • E Value
      0E0
    • BLAST Score
      813.6 bits
    • Similarity
      96.54%
    • Coverage
      99.8%
    • Alignment (schematic)

      SEQ ID NO 8
      99.8% cov
      AE002098
      0.02% cov
    • Alignment Length
      491 bp
  • Neisseria meningitidis 053442

    Neisseria meningitidis 053442

    • Public DB hit
      GI:161594571
      CP000381
    • Hit length
      2,153,416 bp
    • E Value
      0E0
    • BLAST Score
      810 bits
    • Similarity
      96.34%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      CP000381
      0.02% cov
    • Alignment Length
      492 bp
  • Neisseria meningitidis M01-240355

    Neisseria meningitidis M01-240355

    • Public DB hit
      GI:325203134
      CP002422
    • Hit length
      2,287,777 bp
    • E Value
      0E0
    • BLAST Score
      804.4 bits
    • Similarity
      96.15%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      CP002422
      0.02% cov
    • Alignment Length
      493 bp
  • Neisseria meningitidis G2136

    Neisseria meningitidis G2136

    • Public DB hit
      GI:325197306
      CP002419
    • Hit length
      2,184,862 bp
    • E Value
      0E0
    • BLAST Score
      804.4 bits
    • Similarity
      96.14%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      CP002419
      0.02% cov
    • Alignment Length
      492 bp
  • Neisseria meningitidis FAM18

    Neisseria meningitidis FAM18

    • Public DB hit
      GI:120865607
      AM421808
    • Hit length
      2,194,961 bp
    • E Value
      0E0
    • BLAST Score
      804.4 bits
    • Similarity
      96.14%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      AM421808
      0.02% cov
    • Alignment Length
      492 bp
  • Neisseria lactamica 020-06

    Neisseria lactamica 020-06

    • Public DB hit
      GI:313004821
      FN995097
    • Hit length
      2,220,606 bp
    • E Value
      4.1E-145
    • BLAST Score
      523.7 bits
    • Similarity
      86.5%
    • Coverage
      98.78%
    • Alignment (schematic)

      SEQ ID NO 8
      98.78% cov
      FN995097
      0.02% cov
    • Alignment Length
      489 bp
Occurrence
3 times in PatSeqDB
Tools
SEQ ID NO
9
Length
492
Sequence Type
nucleotide
Locations
Detailed Description, Drawings, Summary
Declared organism
Neisseria meningitidis
Determined organism
  • Neisseria meningitidis WUE 2594

    Neisseria meningitidis WUE 2594

    • Public DB hit
      GI:319409534
      FR774048
    • Hit length
      2,227,255 bp
    • E Value
      0E0
    • BLAST Score
      909.7 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      FR774048
      0.02% cov
    • Alignment Length
      492 bp
    • CIGAR string
      492M mismatches: 0 - insertions: 0 - deletions: 0
  • Neisseria meningitidis Z2491

    Neisseria meningitidis Z2491

    • Public DB hit
      GI:30407145
      AL157959
    • Hit length
      2,184,406 bp
    • E Value
      0E0
    • BLAST Score
      909.7 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      AL157959
      0.02% cov
    • Alignment Length
      492 bp
    • CIGAR string
      492M mismatches: 0 - insertions: 0 - deletions: 0
  • Neisseria meningitidis alpha710

    Neisseria meningitidis alpha710

    • Public DB hit
      GI:308388224
      CP001561
    • Hit length
      2,242,947 bp
    • E Value
      0E0
    • BLAST Score
      904.1 bits
    • Similarity
      99.8%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      CP001561
      0.02% cov
    • Alignment Length
      492 bp
    • CIGAR string
      439MN52M mismatches: 1 - insertions: 0 - deletions: 0
  • Neisseria meningitidis NZ-05/33

    Neisseria meningitidis NZ-05/33

    • Public DB hit
      GI:325207054
      CP002424
    • Hit length
      2,248,966 bp
    • E Value
      0E0
    • BLAST Score
      880.1 bits
    • Similarity
      98.98%
    • Coverage
      99.8%
    • Alignment (schematic)

      SEQ ID NO 9
      99.8% cov
      CP002424
      0.02% cov
    • Alignment Length
      491 bp
  • Neisseria meningitidis M01-240355

    Neisseria meningitidis M01-240355

    • Public DB hit
      GI:325203134
      CP002422
    • Hit length
      2,287,777 bp
    • E Value
      0E0
    • BLAST Score
      880.1 bits
    • Similarity
      98.98%
    • Coverage
      99.8%
    • Alignment (schematic)

      SEQ ID NO 9
      99.8% cov
      CP002422
      0.02% cov
    • Alignment Length
      491 bp
  • Neisseria meningitidis M01-240149

    Neisseria meningitidis M01-240149

    • Public DB hit
      GI:325201197
      CP002421
    • Hit length
      2,223,518 bp
    • E Value
      0E0
    • BLAST Score
      880.1 bits
    • Similarity
      98.98%
    • Coverage
      99.8%
    • Alignment (schematic)

      SEQ ID NO 9
      99.8% cov
      CP002421
      0.02% cov
    • Alignment Length
      491 bp
  • Neisseria meningitidis 8013

    Neisseria meningitidis 8013

    • Public DB hit
      GI:261391559
      FM999788
    • Hit length
      2,277,550 bp
    • E Value
      0E0
    • BLAST Score
      867.2 bits
    • Similarity
      98.57%
    • Coverage
      99.8%
    • Alignment (schematic)

      SEQ ID NO 9
      99.8% cov
      FM999788
      0.02% cov
    • Alignment Length
      491 bp
  • Neisseria meningitidis alpha14

    Neisseria meningitidis alpha14

    • Public DB hit
      GI:254667570
      AM889136
    • Hit length
      2,145,295 bp
    • E Value
      0E0
    • BLAST Score
      867.2 bits
    • Similarity
      98.57%
    • Coverage
      99.8%
    • Alignment (schematic)

      SEQ ID NO 9
      99.8% cov
      AM889136
      0.02% cov
    • Alignment Length
      491 bp
  • Neisseria meningitidis 053442

    Neisseria meningitidis 053442

    • Public DB hit
      GI:161594571
      CP000381
    • Hit length
      2,153,416 bp
    • E Value
      0E0
    • BLAST Score
      861.7 bits
    • Similarity
      98.37%
    • Coverage
      99.8%
    • Alignment (schematic)

      SEQ ID NO 9
      99.8% cov
      CP000381
      0.02% cov
    • Alignment Length
      491 bp
  • Neisseria meningitidis G2136

    Neisseria meningitidis G2136

    • Public DB hit
      GI:325197306
      CP002419
    • Hit length
      2,184,862 bp
    • E Value
      0E0
    • BLAST Score
      856.1 bits
    • Similarity
      98.17%
    • Coverage
      99.8%
    • Alignment (schematic)

      SEQ ID NO 9
      99.8% cov
      CP002419
      0.02% cov
    • Alignment Length
      491 bp
  • Neisseria meningitidis FAM18

    Neisseria meningitidis FAM18

    • Public DB hit
      GI:120865607
      AM421808
    • Hit length
      2,194,961 bp
    • E Value
      0E0
    • BLAST Score
      856.1 bits
    • Similarity
      98.17%
    • Coverage
      99.8%
    • Alignment (schematic)

      SEQ ID NO 9
      99.8% cov
      AM421808
      0.02% cov
    • Alignment Length
      491 bp
  • Neisseria meningitidis M04-240196

    Neisseria meningitidis M04-240196

    • Public DB hit
      GI:325205106
      CP002423
    • Hit length
      2,250,449 bp
    • E Value
      0E0
    • BLAST Score
      846.9 bits
    • Similarity
      97.76%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      CP002423
      0.02% cov
    • Alignment Length
      492 bp
  • Neisseria meningitidis H44/76

    Neisseria meningitidis H44/76

    • Public DB hit
      GI:325199235
      CP002420
    • Hit length
      2,240,883 bp
    • E Value
      0E0
    • BLAST Score
      846.9 bits
    • Similarity
      97.76%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      CP002420
      0.02% cov
    • Alignment Length
      492 bp
  • Neisseria meningitidis MC58

    Neisseria meningitidis MC58

    • Public DB hit
      GI:66731897
      AE002098
    • Hit length
      2,272,360 bp
    • E Value
      0E0
    • BLAST Score
      846.9 bits
    • Similarity
      97.76%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      AE002098
      0.02% cov
    • Alignment Length
      492 bp
  • Neisseria gonorrhoeae TCDC-NG08107

    Neisseria gonorrhoeae TCDC-NG08107

    • Public DB hit
      GI:317163438
      CP002440
    • Hit length
      2,154,835 bp
    • E Value
      0E0
    • BLAST Score
      817.3 bits
    • Similarity
      96.74%
    • Coverage
      99.8%
    • Alignment (schematic)

      SEQ ID NO 9
      99.8% cov
      CP002440
      0.02% cov
    • Alignment Length
      491 bp
  • Neisseria gonorrhoeae NCCP11945

    Neisseria gonorrhoeae NCCP11945

    • Public DB hit
      GI:193932879
      CP001050
    • Hit length
      2,232,025 bp
    • E Value
      0E0
    • BLAST Score
      817.3 bits
    • Similarity
      96.74%
    • Coverage
      99.8%
    • Alignment (schematic)

      SEQ ID NO 9
      99.8% cov
      CP001050
      0.02% cov
    • Alignment Length
      491 bp
  • Neisseria gonorrhoeae FA 1090

    Neisseria gonorrhoeae FA 1090

    • Public DB hit
      GI:59717368
      AE004969
    • Hit length
      2,153,922 bp
    • E Value
      0E0
    • BLAST Score
      817.3 bits
    • Similarity
      96.74%
    • Coverage
      99.8%
    • Alignment (schematic)

      SEQ ID NO 9
      99.8% cov
      AE004969
      0.02% cov
    • Alignment Length
      491 bp
  • Neisseria lactamica 020-06

    Neisseria lactamica 020-06

    • Public DB hit
      GI:313004821
      FN995097
    • Hit length
      2,220,606 bp
    • E Value
      4.13E-140
    • BLAST Score
      507.1 bits
    • Similarity
      87.99%
    • Coverage
      87.4%
    • Alignment (schematic)

      SEQ ID NO 9
      87.4% cov
      FN995097
      0.02% cov
    • Alignment Length
      433 bp
Occurrence
4 times in PatSeqDB
Tools
SEQ ID NO
10
Length
462
Sequence Type
nucleotide
Locations
Detailed Description, Drawings, Summary
Declared organism
Streptococcus pyogenes
Determined organism
  • Streptococcus pyogenes NZ131

    Streptococcus pyogenes NZ131

    • Public DB hit
      GI:209539788
      CP000829
    • Hit length
      1,815,785 bp
    • E Value
      0E0
    • BLAST Score
      848.7 bits
    • Similarity
      99.78%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      CP000829
      0.03% cov
    • Alignment Length
      462 bp
    • CIGAR string
      156MN305M mismatches: 1 - insertions: 0 - deletions: 0
  • Streptococcus pyogenes MGAS10750

    Streptococcus pyogenes MGAS10750

    • Public DB hit
      GI:94546904
      CP000262
    • Hit length
      1,937,111 bp
    • E Value
      0E0
    • BLAST Score
      848.7 bits
    • Similarity
      99.78%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      CP000262
      0.02% cov
    • Alignment Length
      462 bp
    • CIGAR string
      156MN305M mismatches: 1 - insertions: 0 - deletions: 0
  • Streptococcus pyogenes MGAS10270

    Streptococcus pyogenes MGAS10270

    • Public DB hit
      GI:94543017
      CP000260
    • Hit length
      1,928,252 bp
    • E Value
      0E0
    • BLAST Score
      848.7 bits
    • Similarity
      99.78%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      CP000260
      0.02% cov
    • Alignment Length
      462 bp
    • CIGAR string
      156MN305M mismatches: 1 - insertions: 0 - deletions: 0
  • Streptococcus pyogenes MGAS5005

    Streptococcus pyogenes MGAS5005

    • Public DB hit
      GI:71852596
      CP000017
    • Hit length
      1,838,554 bp
    • E Value
      0E0
    • BLAST Score
      848.7 bits
    • Similarity
      99.78%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      CP000017
      0.03% cov
    • Alignment Length
      462 bp
  • Streptococcus pyogenes MGAS6180

    Streptococcus pyogenes MGAS6180

    • Public DB hit
      GI:71801762
      CP000056
    • Hit length
      1,897,573 bp
    • E Value
      0E0
    • BLAST Score
      848.7 bits
    • Similarity
      99.78%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      CP000056
      0.02% cov
    • Alignment Length
      462 bp
  • Streptococcus pyogenes SSI-1

    Streptococcus pyogenes SSI-1

    • Public DB hit
      GI:47118313
      BA000034
    • Hit length
      1,894,275 bp
    • E Value
      0E0
    • BLAST Score
      848.7 bits
    • Similarity
      99.78%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      BA000034
      0.02% cov
    • Alignment Length
      462 bp
  • Streptococcus pyogenes MGAS315

    Streptococcus pyogenes MGAS315

    • Public DB hit
      GI:21905618
      AE014074
    • Hit length
      1,900,521 bp
    • E Value
      0E0
    • BLAST Score
      848.7 bits
    • Similarity
      99.78%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      AE014074
      0.02% cov
    • Alignment Length
      462 bp
  • Streptococcus pyogenes M1 GAS

    Streptococcus pyogenes M1 GAS

    • Public DB hit
      GI:14286347
      AE004092
    • Hit length
      1,852,441 bp
    • E Value
      0E0
    • BLAST Score
      843.2 bits
    • Similarity
      99.57%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      AE004092
      0.02% cov
    • Alignment Length
      462 bp
  • Streptococcus pyogenes MGAS10394

    Streptococcus pyogenes MGAS10394

    • Public DB hit
      GI:50902420
      CP000003
    • Hit length
      1,899,877 bp
    • E Value
      0E0
    • BLAST Score
      837.7 bits
    • Similarity
      99.35%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      CP000003
      0.02% cov
    • Alignment Length
      463 bp
  • Streptococcus pyogenes MGAS8232

    Streptococcus pyogenes MGAS8232

    • Public DB hit
      GI:19913450
      AE009949
    • Hit length
      1,895,017 bp
    • E Value
      0E0
    • BLAST Score
      832.1 bits
    • Similarity
      99.14%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      AE009949
      0.02% cov
    • Alignment Length
      463 bp
  • Streptococcus pyogenes str. Manfredo

    Streptococcus pyogenes str. Manfredo

    • Public DB hit
      GI:134271134
      AM295007
    • Hit length
      1,841,271 bp
    • E Value
      0E0
    • BLAST Score
      826.6 bits
    • Similarity
      98.92%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      AM295007
      0.03% cov
    • Alignment Length
      463 bp
  • Streptococcus pyogenes MGAS2096

    Streptococcus pyogenes MGAS2096

    • Public DB hit
      GI:94545005
      CP000261
    • Hit length
      1,860,355 bp
    • E Value
      0E0
    • BLAST Score
      821 bits
    • Similarity
      98.7%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      CP000261
      0.02% cov
    • Alignment Length
      463 bp
  • Streptococcus pyogenes MGAS9429

    Streptococcus pyogenes MGAS9429

    • Public DB hit
      GI:94541139
      CP000259
    • Hit length
      1,836,467 bp
    • E Value
      0E0
    • BLAST Score
      821 bits
    • Similarity
      98.7%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      CP000259
      0.03% cov
    • Alignment Length
      463 bp
  • Streptococcus dysgalactiae subsp. equisimilis ATCC 12394

    Streptococcus dysgalactiae subsp. equisimilis ATCC 12394

    • Public DB hit
      GI:323126259
      CP002215
    • Hit length
      2,159,491 bp
    • E Value
      2.99E-141
    • BLAST Score
      510.8 bits
    • Similarity
      86.78%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      CP002215
      0.02% cov
    • Alignment Length
      469 bp
  • Streptococcus dysgalactiae subsp. equisimilis GGS_124

    Streptococcus dysgalactiae subsp. equisimilis GGS_124

    • Public DB hit
      GI:242390096
      AP010935
    • Hit length
      2,106,340 bp
    • E Value
      2.99E-141
    • BLAST Score
      510.8 bits
    • Similarity
      86.78%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      AP010935
      0.02% cov
    • Alignment Length
      469 bp
  • Streptococcus parauberis KCTC 11537

    Streptococcus parauberis KCTC 11537

    • Public DB hit
      GI:333119514
      CP002471
    • Hit length
      2,143,887 bp
    • E Value
      5.48E-74
    • BLAST Score
      287.4 bits
    • Similarity
      78.87%
    • Coverage
      95.89%
    • Alignment (schematic)

      SEQ ID NO 10
      95.89% cov
      CP002471
      0.02% cov
    • Alignment Length
      459 bp
  • Streptococcus uberis 0140J

    Streptococcus uberis 0140J

    • Public DB hit
      GI:222113012
      AM946015
    • Hit length
      1,852,352 bp
    • E Value
      1.53E-69
    • BLAST Score
      272.6 bits
    • Similarity
      79.38%
    • Coverage
      87.66%
    • Alignment (schematic)

      SEQ ID NO 10
      87.66% cov
      AM946015
      0.02% cov
    • Alignment Length
      417 bp
Occurrence
4 times in PatSeqDB
Tools

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