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Search for Biological Sequences disclosed in Patents

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Data obtained from: DDBJ Pat NCBI GenBank USPTO Fulltext EMBL-EBI Pat
31 sequences found in this patent (in total)

Displaying 1 - 10 of 31 sequences

SEQ ID NO
Length
Type
Locations
Organisms
Occurrence
Tools
SEQ ID NO
1
Length
27
Type
nucleotide
Locations
Detailed Description, Summary

Declared organism:
Artificial

Determined organism:
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:332831146
      XM_528222
      1 of 4 hits reported for Pan troglodytes.
    • Hit length
      3,431 bp
    • E Value
      7.05E-5
    • BLAST Score
      52 bits
    • Similarity
      100%
    • Coverage
      96.3%
    • Alignment (schematic)

      SEQ ID NO 1
      96.3% cov
      XM_528222
      0.76% cov
    • Alignment Length
      26 bp
    • CIGAR string
      26M1H mismatches: 0 - insertions: 0 - deletions: 0
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332214185
      XM_003256164
      1 of 2 hits reported for Nomascus leucogenys.
    • Hit length
      3,413 bp
    • E Value
      7.05E-5
    • BLAST Score
      52 bits
    • Similarity
      100%
    • Coverage
      96.3%
    • Alignment (schematic)

      SEQ ID NO 1
      96.3% cov
      XM_003256164
      0.76% cov
    • Alignment Length
      26 bp
    • CIGAR string
      26M1H mismatches: 0 - insertions: 0 - deletions: 0
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:297683559
      XR_094087
      1 of 2 hits reported for Pongo abelii.
    • Hit length
      3,054 bp
    • E Value
      7.05E-5
    • BLAST Score
      52 bits
    • Similarity
      100%
    • Coverage
      96.3%
    • Alignment (schematic)

      SEQ ID NO 1
      96.3% cov
      XR_094087
      0.85% cov
    • Alignment Length
      26 bp
    • CIGAR string
      26M1H mismatches: 0 - insertions: 0 - deletions: 0
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:297300031
      XM_001098841
      1 of 2 hits reported for Macaca mulatta.
    • Hit length
      3,304 bp
    • E Value
      7.05E-5
    • BLAST Score
      52 bits
    • Similarity
      100%
    • Coverage
      96.3%
    • Alignment (schematic)

      SEQ ID NO 1
      96.3% cov
      XM_001098841
      0.79% cov
    • Alignment Length
      26 bp
  • Callithrix jacchus

    Callithrix jacchus

    • Public DB hit
      GI:296227282
      XM_002759268
      1 of 2 hits reported for Callithrix jacchus.
    • Hit length
      3,300 bp
    • E Value
      7.05E-5
    • BLAST Score
      52 bits
    • Similarity
      100%
    • Coverage
      96.3%
    • Alignment (schematic)

      SEQ ID NO 1
      96.3% cov
      XM_002759268
      0.79% cov
    • Alignment Length
      26 bp
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:169791020
      NM_005328
      1 of 6 hits reported for Homo sapiens.
    • Hit length
      3,275 bp
    • E Value
      7.05E-5
    • BLAST Score
      52 bits
    • Similarity
      100%
    • Coverage
      96.3%
    • Alignment (schematic)

      SEQ ID NO 1
      96.3% cov
      NM_005328
      0.79% cov
    • Alignment Length
      26 bp
  • Mus musculus

    Mus musculus

    • Public DB hit
      GI:160358867
      NM_008216
      1 of 3 hits reported for Mus musculus.
    • Hit length
      4,262 bp
    • E Value
      7.05E-5
    • BLAST Score
      52 bits
    • Similarity
      100%
    • Coverage
      96.3%
    • Alignment (schematic)

      SEQ ID NO 1
      96.3% cov
      NM_008216
      0.61% cov
    • Alignment Length
      26 bp
  • Canis lupus familiaris

    Canis lupus familiaris

    • Public DB hit
      GI:73974570
      XM_539153
    • Hit length
      2,191 bp
    • E Value
      7.05E-5
    • BLAST Score
      52 bits
    • Similarity
      100%
    • Coverage
      96.3%
    • Alignment (schematic)

      SEQ ID NO 1
      96.3% cov
      XM_539153
      1.19% cov
    • Alignment Length
      26 bp
  • Equus caballus

    Equus caballus

    • Public DB hit
      GI:126352519
      NM_001081801
    • Hit length
      2,802 bp
    • E Value
      7.05E-5
    • BLAST Score
      52 bits
    • Similarity
      100%
    • Coverage
      96.3%
    • Alignment (schematic)

      SEQ ID NO 1
      96.3% cov
      NM_001081801
      0.93% cov
    • Alignment Length
      26 bp
  • Bos taurus

    Bos taurus

    • Public DB hit
      GI:31342885
      NM_174079
    • Hit length
      2,946 bp
    • E Value
      7.05E-5
    • BLAST Score
      52 bits
    • Similarity
      100%
    • Coverage
      96.3%
    • Alignment (schematic)

      SEQ ID NO 1
      96.3% cov
      NM_174079
      0.88% cov
    • Alignment Length
      26 bp
  • Rattus norvegicus

    Rattus norvegicus

    • Public DB hit
      GI:6981007
      NM_013153
    • Hit length
      4,172 bp
    • E Value
      7.05E-5
    • BLAST Score
      52 bits
    • Similarity
      100%
    • Coverage
      96.3%
    • Alignment (schematic)

      SEQ ID NO 1
      96.3% cov
      NM_013153
      0.62% cov
    • Alignment Length
      26 bp
Occurrence
17 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
2
Length
29
Type
nucleotide
Locations
Detailed Description, Summary

Declared organism:
Artificial

Determined organism:
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:332831146
      XM_528222
      1 of 4 hits reported for Pan troglodytes.
    • Hit length
      3,431 bp
    • E Value
      1.28E-6
    • BLAST Score
      58 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      XM_528222
      0.85% cov
    • Alignment Length
      29 bp
    • CIGAR string
      29M mismatches: 0 - insertions: 0 - deletions: 0
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332214185
      XM_003256164
      1 of 2 hits reported for Nomascus leucogenys.
    • Hit length
      3,413 bp
    • E Value
      1.28E-6
    • BLAST Score
      58 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      XM_003256164
      0.85% cov
    • Alignment Length
      29 bp
    • CIGAR string
      29M mismatches: 0 - insertions: 0 - deletions: 0
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:297300031
      XM_001098841
      1 of 2 hits reported for Macaca mulatta.
    • Hit length
      3,304 bp
    • E Value
      1.28E-6
    • BLAST Score
      58 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      XM_001098841
      0.88% cov
    • Alignment Length
      29 bp
    • CIGAR string
      29M mismatches: 0 - insertions: 0 - deletions: 0
  • Callithrix jacchus

    Callithrix jacchus

    • Public DB hit
      GI:296227282
      XM_002759268
      1 of 2 hits reported for Callithrix jacchus.
    • Hit length
      3,300 bp
    • E Value
      1.28E-6
    • BLAST Score
      58 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      XM_002759268
      0.88% cov
    • Alignment Length
      29 bp
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:169791020
      NM_005328
      1 of 9 hits reported for Homo sapiens.
    • Hit length
      3,275 bp
    • E Value
      1.28E-6
    • BLAST Score
      58 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      NM_005328
      0.89% cov
    • Alignment Length
      29 bp
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:297683559
      XR_094087
      1 of 2 hits reported for Pongo abelii.
    • Hit length
      3,054 bp
    • E Value
      3.13E-4
    • BLAST Score
      50.1 bits
    • Similarity
      96.55%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      XR_094087
      0.95% cov
    • Alignment Length
      29 bp
Occurrence
17 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
3
Length
18
Type
nucleotide
Locations
Detailed Description

Declared organism:
Artificial

Determined organism:
  • Taeniopygia guttata

    Taeniopygia guttata

    • Public DB hit
      GI:224070441
      XM_002191389
    • Hit length
      1,323 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      XM_002191389
      1.36% cov
    • Alignment Length
      18 bp
    • CIGAR string
      18M mismatches: 0 - insertions: 0 - deletions: 0
  • Plasmodium berghei ANKA

    Plasmodium berghei ANKA

    • Public DB hit
      GI:67983252
      XM_663856
    • Hit length
      395 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      XM_663856
      4.56% cov
    • Alignment Length
      18 bp
    • CIGAR string
      18M mismatches: 0 - insertions: 0 - deletions: 0
  • Cloning vector pAW8ENdeI-C3HA

    Cloning vector pAW8ENdeI-C3HA

    • Public DB hit
      GI:336089660
      JF340118
    • Hit length
      8,433 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      JF340118
      0.21% cov
    • Alignment Length
      18 bp
    • CIGAR string
      18M mismatches: 0 - insertions: 0 - deletions: 0
  • Cloning vector pAW8ENdeI-CTAP

    Cloning vector pAW8ENdeI-CTAP

    • Public DB hit
      GI:336089658
      JF340117
    • Hit length
      8,892 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      JF340117
      0.2% cov
    • Alignment Length
      18 bp
  • Cloning vector pAW8ENdeI-cyEGFP

    Cloning vector pAW8ENdeI-cyEGFP

    • Public DB hit
      GI:336089656
      JF340116
    • Hit length
      9,057 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      JF340116
      0.2% cov
    • Alignment Length
      18 bp
  • Cloning vector pAW8ENdeI

    Cloning vector pAW8ENdeI

    • Public DB hit
      GI:336089653
      JF340115
    • Hit length
      8,289 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      JF340115
      0.22% cov
    • Alignment Length
      18 bp
  • Baculovirus shuttle vector pBacHTS

    Baculovirus shuttle vector pBacHTS

    • Public DB hit
      GI:334847646
      JN029539
    • Hit length
      6,205 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      JN029539
      0.29% cov
    • Alignment Length
      18 bp
  • Expression vector pLoxGentrc

    Expression vector pLoxGentrc

    • Public DB hit
      GI:334265229
      JF934954
    • Hit length
      6,295 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      JF934954
      0.29% cov
    • Alignment Length
      18 bp
  • Cloning vector pBAD24-Gluc

    Cloning vector pBAD24-Gluc

    • Public DB hit
      GI:326650004
      HM241886
    • Hit length
      5,013 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      HM241886
      0.36% cov
    • Alignment Length
      18 bp
  • Binary vector pCMIRT15

    Binary vector pCMIRT15

    • Public DB hit
      GI:333974682
      HQ540318
    • Hit length
      10,759 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      HQ540318
      0.17% cov
    • Alignment Length
      18 bp
  • Cloning vector pDC-KHT

    Cloning vector pDC-KHT

    • Public DB hit
      GI:333805711
      JF430587
    • Hit length
      6,458 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      JF430587
      0.28% cov
    • Alignment Length
      18 bp
  • Cloning vector pDC-KHGT

    Cloning vector pDC-KHGT

    • Public DB hit
      GI:333805710
      JF430586
    • Hit length
      7,173 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      JF430586
      0.25% cov
    • Alignment Length
      18 bp
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:333610205
      JF495130
    • Hit length
      7,348 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      JF495130
      0.24% cov
    • Alignment Length
      18 bp
  • Shigella flexneri

    Shigella flexneri

    • Public DB hit
      GI:333362615
      JF813188
    • Hit length
      4,043 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      JF813188
      0.45% cov
    • Alignment Length
      18 bp
  • Salmonella enterica subsp. enterica serovar Bardo

    Salmonella enterica subsp. enterica serovar Bardo

    • Public DB hit
      GI:313671958
      HQ230977
    • Hit length
      8,198 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      HQ230977
      0.22% cov
    • Alignment Length
      18 bp
  • Salmonella enterica subsp. enterica serovar Typhimurium

    Salmonella enterica subsp. enterica serovar Typhimurium

    • Public DB hit
      GI:313671950
      HQ230976
    • Hit length
      7,132 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      HQ230976
      0.25% cov
    • Alignment Length
      18 bp
  • Expression vector LIC-pDEST-LC2

    Expression vector LIC-pDEST-LC2

    • Public DB hit
      GI:332650943
      JF327847
    • Hit length
      6,349 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      JF327847
      0.28% cov
    • Alignment Length
      18 bp
  • Expression vector LIC-pDEST-LC1

    Expression vector LIC-pDEST-LC1

    • Public DB hit
      GI:332650941
      JF327846
    • Hit length
      6,366 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      JF327846
      0.28% cov
    • Alignment Length
      18 bp
  • Expression vector LIC-pIVEX-LC2

    Expression vector LIC-pIVEX-LC2

    • Public DB hit
      GI:332650939
      JF327845
    • Hit length
      5,236 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      JF327845
      0.34% cov
    • Alignment Length
      18 bp
  • Expression vector LIC-pIVEX-LC1

    Expression vector LIC-pIVEX-LC1

    • Public DB hit
      GI:332650937
      JF327844
    • Hit length
      5,250 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      JF327844
      0.34% cov
    • Alignment Length
      18 bp
  • Expression vector XNWT_GW

    Expression vector XNWT_GW

    • Public DB hit
      GI:331687744
      HQ700955
    • Hit length
      8,842 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      HQ700955
      0.2% cov
    • Alignment Length
      18 bp
  • Expression vector NWTX_GW

    Expression vector NWTX_GW

    • Public DB hit
      GI:331687739
      HQ700954
    • Hit length
      8,840 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      HQ700954
      0.2% cov
    • Alignment Length
      18 bp
  • Expression vector NX32_GW

    Expression vector NX32_GW

    • Public DB hit
      GI:331687729
      HQ700952
    • Hit length
      8,899 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      HQ700952
      0.2% cov
    • Alignment Length
      18 bp
  • Expression vector XN21_GW

    Expression vector XN21_GW

    • Public DB hit
      GI:331687724
      HQ700951
    • Hit length
      8,919 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      HQ700951
      0.2% cov
    • Alignment Length
      18 bp
  • Expression vector XN22_GW

    Expression vector XN22_GW

    • Public DB hit
      GI:331687720
      HQ646606
    • Hit length
      8,842 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      HQ646606
      0.2% cov
    • Alignment Length
      18 bp
Occurrence
17 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
4
Length
29
Type
nucleotide
Locations
Detailed Description

Declared organism:
Artificial

Determined organism:
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:332857246
      XM_524362
      1 of 2 hits reported for Pan troglodytes.
    • Hit length
      1,760 bp
    • E Value
      1.28E-6
    • BLAST Score
      58 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      XM_524362
      1.65% cov
    • Alignment Length
      29 bp
    • CIGAR string
      29M mismatches: 0 - insertions: 0 - deletions: 0
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:297716404
      XM_002834466
      1 of 2 hits reported for Pongo abelii.
    • Hit length
      972 bp
    • E Value
      1.28E-6
    • BLAST Score
      58 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      XM_002834466
      2.98% cov
    • Alignment Length
      29 bp
    • CIGAR string
      29M mismatches: 0 - insertions: 0 - deletions: 0
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:167466170
      NM_001523
      1 of 7 hits reported for Homo sapiens.
    • Hit length
      2,116 bp
    • E Value
      1.28E-6
    • BLAST Score
      58 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      NM_001523
      1.37% cov
    • Alignment Length
      29 bp
    • CIGAR string
      29M mismatches: 0 - insertions: 0 - deletions: 0
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:123995452
      DQ894402
      1 of 2 hits reported for synthetic construct.
    • Hit length
      1,774 bp
    • E Value
      1.28E-6
    • BLAST Score
      58 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      DQ894402
      1.63% cov
    • Alignment Length
      29 bp
Occurrence
17 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
5
Length
19
Type
nucleotide
Locations
Detailed Description

Declared organism:
Artificial

Determined organism:
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:169791020
      NM_005328
      1 of 8 hits reported for Homo sapiens.
    • Hit length
      3,275 bp
    • E Value
      2.65E-1
    • BLAST Score
      38.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      NM_005328
      0.58% cov
    • Alignment Length
      19 bp
    • CIGAR string
      19M mismatches: 0 - insertions: 0 - deletions: 0
  • Paenibacillus sp. JDR-2

    Paenibacillus sp. JDR-2

    • Public DB hit
      GI:247541662
      CP001656
    • Hit length
      7,184,930 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      94.74%
    • Alignment (schematic)

      SEQ ID NO 5
      94.74% cov
      CP001656
      0% cov
    • Alignment Length
      18 bp
Occurrence
17 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
6
Length
20
Type
nucleotide
Locations
Undetermined

Declared organism:
Artificial

Determined organism:
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332241167
      XM_003269708
      1 of 2 hits reported for Nomascus leucogenys.
    • Hit length
      1,872 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      XM_003269708
      1.07% cov
    • Alignment Length
      20 bp
    • CIGAR string
      20M mismatches: 0 - insertions: 0 - deletions: 0
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:297716404
      XM_002834466
      1 of 4 hits reported for Pongo abelii.
    • Hit length
      972 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      XM_002834466
      2.06% cov
    • Alignment Length
      20 bp
    • CIGAR string
      20M mismatches: 0 - insertions: 0 - deletions: 0
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:297277755
      XM_001116420
      1 of 2 hits reported for Macaca mulatta.
    • Hit length
      2,101 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      XM_001116420
      0.95% cov
    • Alignment Length
      20 bp
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:167466170
      NM_001523
      1 of 9 hits reported for Homo sapiens.
    • Hit length
      2,116 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      NM_001523
      0.95% cov
    • Alignment Length
      20 bp
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:123995452
      DQ894402
      1 of 2 hits reported for synthetic construct.
    • Hit length
      1,774 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      DQ894402
      1.13% cov
    • Alignment Length
      20 bp
Occurrence
17 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
7
Length
18
Type
nucleotide
Locations
Undetermined

Declared organism:
Artificial

Determined organism:
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:297716328
      XM_002834435
      1 of 2 hits reported for Pongo abelii.
    • Hit length
      789 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      XM_002834435
      2.28% cov
    • Alignment Length
      18 bp
    • CIGAR string
      18M mismatches: 0 - insertions: 0 - deletions: 0
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:167466170
      NM_001523
      1 of 8 hits reported for Homo sapiens.
    • Hit length
      2,116 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      NM_001523
      0.85% cov
    • Alignment Length
      18 bp
    • CIGAR string
      18M mismatches: 0 - insertions: 0 - deletions: 0
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:123995452
      DQ894402
      1 of 2 hits reported for synthetic construct.
    • Hit length
      1,774 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      DQ894402
      1.01% cov
    • Alignment Length
      18 bp
  • Monodelphis domestica

    Monodelphis domestica

    • Public DB hit
      GI:126304796
      XM_001366646
      1 of 2 hits reported for Monodelphis domestica.
    • Hit length
      1,647 bp
    • E Value
      4.14E0
    • BLAST Score
      34.2 bits
    • Similarity
      100%
    • Coverage
      94.44%
    • Alignment (schematic)

      SEQ ID NO 7
      94.44% cov
      XM_001366646
      1.03% cov
    • Alignment Length
      17 bp
  • Chaetomium globosum CBS 148.51

    Chaetomium globosum CBS 148.51

    • Public DB hit
      GI:116196997
      XM_001224310
      1 of 2 hits reported for Chaetomium globosum CBS 148.51.
    • Hit length
      3,681 bp
    • E Value
      4.14E0
    • BLAST Score
      34.2 bits
    • Similarity
      100%
    • Coverage
      94.44%
    • Alignment (schematic)

      SEQ ID NO 7
      94.44% cov
      XM_001224310
      0.46% cov
    • Alignment Length
      17 bp
  • Arabidopsis thaliana

    Arabidopsis thaliana

    • Public DB hit
      GI:30696109
      NM_124559
      1 of 4 hits reported for Arabidopsis thaliana.
    • Hit length
      3,151 bp
    • E Value
      4.14E0
    • BLAST Score
      34.2 bits
    • Similarity
      100%
    • Coverage
      94.44%
    • Alignment (schematic)

      SEQ ID NO 7
      94.44% cov
      NM_124559
      0.54% cov
    • Alignment Length
      17 bp
  • Sus scrofa

    Sus scrofa

    • Public DB hit
      GI:47575892
      NM_001001268
      1 of 3 hits reported for Sus scrofa.
    • Hit length
      3,995 bp
    • E Value
      4.14E0
    • BLAST Score
      34.2 bits
    • Similarity
      100%
    • Coverage
      94.44%
    • Alignment (schematic)

      SEQ ID NO 7
      94.44% cov
      NM_001001268
      0.43% cov
    • Alignment Length
      17 bp
  • Oryza punctata

    Oryza punctata

    • Public DB hit
      GI:221149185
      FJ581043
    • Hit length
      167,491 bp
    • E Value
      4.14E0
    • BLAST Score
      34.2 bits
    • Similarity
      100%
    • Coverage
      94.44%
    • Alignment (schematic)

      SEQ ID NO 7
      94.44% cov
      FJ581043
      0.01% cov
    • Alignment Length
      17 bp
Occurrence
17 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
8
Length
27
Type
nucleotide
Locations
Undetermined

Declared organism:
Artificial

Determined organism:
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332241167
      XM_003269708
      1 of 2 hits reported for Nomascus leucogenys.
    • Hit length
      1,872 bp
    • E Value
      1.78E-5
    • BLAST Score
      54 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      XM_003269708
      1.44% cov
    • Alignment Length
      27 bp
    • CIGAR string
      27M mismatches: 0 - insertions: 0 - deletions: 0
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:297716328
      XM_002834435
      1 of 2 hits reported for Pongo abelii.
    • Hit length
      789 bp
    • E Value
      1.78E-5
    • BLAST Score
      54 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      XM_002834435
      3.42% cov
    • Alignment Length
      27 bp
    • CIGAR string
      27M mismatches: 0 - insertions: 0 - deletions: 0
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:297277755
      XM_001116420
      1 of 2 hits reported for Macaca mulatta.
    • Hit length
      2,101 bp
    • E Value
      1.78E-5
    • BLAST Score
      54 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      XM_001116420
      1.29% cov
    • Alignment Length
      27 bp
    • CIGAR string
      27M mismatches: 0 - insertions: 0 - deletions: 0
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:167466170
      NM_001523
      1 of 8 hits reported for Homo sapiens.
    • Hit length
      2,116 bp
    • E Value
      1.78E-5
    • BLAST Score
      54 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      NM_001523
      1.28% cov
    • Alignment Length
      27 bp
  • Papio anubis

    Papio anubis

    • Public DB hit
      GI:162951947
      NM_001112611
      1 of 2 hits reported for Papio anubis.
    • Hit length
      2,109 bp
    • E Value
      1.78E-5
    • BLAST Score
      54 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      NM_001112611
      1.28% cov
    • Alignment Length
      27 bp
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:123995452
      DQ894402
      1 of 2 hits reported for synthetic construct.
    • Hit length
      1,774 bp
    • E Value
      1.78E-5
    • BLAST Score
      54 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      DQ894402
      1.52% cov
    • Alignment Length
      27 bp
  • Bos taurus

    Bos taurus

    • Public DB hit
      GI:297485936
      XM_002695251
      1 of 4 hits reported for Bos taurus.
    • Hit length
      2,067 bp
    • E Value
      1.06E0
    • BLAST Score
      38.2 bits
    • Similarity
      92.59%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      XM_002695251
      1.31% cov
    • Alignment Length
      27 bp
Occurrence
17 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
9
Length
19
Type
nucleotide
Locations
Undetermined

Declared organism:
Artificial

Determined organism:
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:332831146
      XM_528222
      1 of 4 hits reported for Pan troglodytes.
    • Hit length
      3,431 bp
    • E Value
      2.65E-1
    • BLAST Score
      38.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      XM_528222
      0.55% cov
    • Alignment Length
      19 bp
    • CIGAR string
      19M mismatches: 0 - insertions: 0 - deletions: 0
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:299829247
      NR_002835
      1 of 6 hits reported for Homo sapiens.
    • Hit length
      2,300 bp
    • E Value
      2.65E-1
    • BLAST Score
      38.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      NR_002835
      0.83% cov
    • Alignment Length
      19 bp
    • CIGAR string
      19M mismatches: 0 - insertions: 0 - deletions: 0
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:297683560
      XM_002819400
      1 of 2 hits reported for Pongo abelii.
    • Hit length
      842 bp
    • E Value
      2.65E-1
    • BLAST Score
      38.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      XM_002819400
      2.26% cov
    • Alignment Length
      19 bp
    • CIGAR string
      19M mismatches: 0 - insertions: 0 - deletions: 0
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:297300032
      XM_001095409
      1 of 4 hits reported for Macaca mulatta.
    • Hit length
      1,062 bp
    • E Value
      2.65E-1
    • BLAST Score
      38.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      XM_001095409
      1.79% cov
    • Alignment Length
      19 bp
  • Callithrix jacchus

    Callithrix jacchus

    • Public DB hit
      GI:296227282
      XM_002759268
      1 of 2 hits reported for Callithrix jacchus.
    • Hit length
      3,300 bp
    • E Value
      2.65E-1
    • BLAST Score
      38.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      XM_002759268
      0.58% cov
    • Alignment Length
      19 bp
  • Mus musculus

    Mus musculus

    • Public DB hit
      GI:274325702
      NR_002874
      1 of 7 hits reported for Mus musculus.
    • Hit length
      485 bp
    • E Value
      2.65E-1
    • BLAST Score
      38.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      NR_002874
      3.92% cov
    • Alignment Length
      19 bp
Occurrence
17 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
10
Length
21
Type
nucleotide
Locations
Undetermined

Declared organism:
Artificial

Determined organism:
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:332831146
      XM_528222
      1 of 6 hits reported for Pan troglodytes.
    • Hit length
      3,431 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      XM_528222
      0.61% cov
    • Alignment Length
      21 bp
    • CIGAR string
      21M mismatches: 0 - insertions: 0 - deletions: 0
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:299829247
      NR_002835
      1 of 11 hits reported for Homo sapiens.
    • Hit length
      2,300 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      NR_002835
      0.91% cov
    • Alignment Length
      21 bp
    • CIGAR string
      21M mismatches: 0 - insertions: 0 - deletions: 0
  • Acinetobacter sp. ADP1

    Acinetobacter sp. ADP1

    • Public DB hit
      GI:49529273
      CR543861
      1 of 2 hits reported for Acinetobacter sp. ADP1.
    • Hit length
      3,598,621 bp
    • E Value
      1.01E-1
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      95.24%
    • Alignment (schematic)

      SEQ ID NO 10
      95.24% cov
      CR543861
      0% cov
    • Alignment Length
      20 bp
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332214185
      XM_003256164
      1 of 2 hits reported for Nomascus leucogenys.
    • Hit length
      3,413 bp
    • E Value
      3.98E-1
    • BLAST Score
      38.2 bits
    • Similarity
      100%
    • Coverage
      90.48%
    • Alignment (schematic)

      SEQ ID NO 10
      90.48% cov
      XM_003256164
      0.56% cov
    • Alignment Length
      19 bp
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:297683560
      XM_002819400
    • Hit length
      842 bp
    • E Value
      3.98E-1
    • BLAST Score
      38.2 bits
    • Similarity
      100%
    • Coverage
      90.48%
    • Alignment (schematic)

      SEQ ID NO 10
      90.48% cov
      XM_002819400
      2.26% cov
    • Alignment Length
      19 bp
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:297300032
      XM_001095409
      1 of 2 hits reported for Macaca mulatta.
    • Hit length
      1,062 bp
    • E Value
      3.98E-1
    • BLAST Score
      38.2 bits
    • Similarity
      100%
    • Coverage
      90.48%
    • Alignment (schematic)

      SEQ ID NO 10
      90.48% cov
      XM_001095409
      1.79% cov
    • Alignment Length
      19 bp
  • Callithrix jacchus

    Callithrix jacchus

    • Public DB hit
      GI:296227282
      XM_002759268
    • Hit length
      3,300 bp
    • E Value
      3.98E-1
    • BLAST Score
      38.2 bits
    • Similarity
      100%
    • Coverage
      90.48%
    • Alignment (schematic)

      SEQ ID NO 10
      90.48% cov
      XM_002759268
      0.58% cov
    • Alignment Length
      19 bp
Occurrence
17 times in PatSeqDB
Tools
PatSeq Finder

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