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Search for Biological Sequences disclosed in Patents

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Data obtained from: DDBJ Pat NCBI GenBank USPTO Fulltext EMBL-EBI Pat
63 sequences found in this patent (in total)

Displaying 1 - 10 of 63 sequences

SEQ ID NO
Length
Type
Locations
Organisms
Occurrence
Tools
SEQ ID NO
1
Length
646
Type
nucleotide
Locations
Drawings

Declared organism:
Streptomyces hygroscopicus

Determined organism:
  • Streptomyces rapamycinicus

    Streptomyces rapamycinicus

    • Public DB hit
      GI:987088
      X86780
    • Hit length
      107,379 bp
    • E Value
      0E0
    • BLAST Score
      1,149.7 bits
    • Similarity
      98.76%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      X86780
      0.6% cov
    • Alignment Length
      646 bp
    • CIGAR string
      34MN301MN152MN11MN5MN5MNM2N129M mismatches: 8 - insertions: 0 - deletions: 0
Occurrence
27 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
2
Length
646
Type
nucleotide
Locations
Drawings

Declared organism:
Streptomyces hygroscopicus

Determined organism:
  • Streptomyces rapamycinicus

    Streptomyces rapamycinicus

    • Public DB hit
      GI:987088
      X86780
    • Hit length
      107,379 bp
    • E Value
      0E0
    • BLAST Score
      1,194.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      X86780
      0.6% cov
    • Alignment Length
      646 bp
    • CIGAR string
      646M mismatches: 0 - insertions: 0 - deletions: 0
Occurrence
27 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
3
Length
404
Type
peptide
Locations
Drawings

Declared organism:
Streptomyces hygroscopicus

Determined organism:
  • Streptomyces rapamycinicus

    Streptomyces rapamycinicus

    • Public DB hit
      GI:987105
      CAA60465
    • Hit length
      404 aa
    • E Value
      0E0
    • BLAST Score
      811.2 bits
    • Similarity
      98.76%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      CAA60465
      100% cov
    • Alignment Length
      404 aa
    • CIGAR string
      43M2NMNMN3MN50MN300M mismatches: 6 - insertions: 0 - deletions: 0
Occurrence
27 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
4
Length
404
Type
peptide
Locations
Drawings

Declared organism:
Streptomyces hygroscopicus

Determined organism:
  • Streptomyces rapamycinicus

    Streptomyces rapamycinicus

    • Public DB hit
      GI:987105
      CAA60465
    • Hit length
      404 aa
    • E Value
      0E0
    • BLAST Score
      825.9 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      CAA60465
      100% cov
    • Alignment Length
      404 aa
    • CIGAR string
      404M mismatches: 0 - insertions: 0 - deletions: 0
Occurrence
27 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
5
Length
758
Type
nucleotide
Locations
Drawings

Declared organism:
Streptomyces hygroscopicus

Determined organism:
  • Streptomyces rapamycinicus

    Streptomyces rapamycinicus

    • Public DB hit
      GI:987088
      X86780
    • Hit length
      107,379 bp
    • E Value
      0E0
    • BLAST Score
      1,358.4 bits
    • Similarity
      99.08%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      X86780
      0.7% cov
    • Alignment Length
      758 bp
    • CIGAR string
      19MN145MN8MN519MN19MD3MD7MD31M mismatches: 4 - insertions: 0 - deletions: 3
  • Streptomyces collinus Tu 365

    Streptomyces collinus Tu 365

    • Public DB hit
      GI:164511408
      AM746336
    • Hit length
      132,542 bp
    • E Value
      0E0
    • BLAST Score
      658.5 bits
    • Similarity
      82.96%
    • Coverage
      98.81%
    • Alignment (schematic)

      SEQ ID NO 5
      98.81% cov
      AM746336
      0.57% cov
    • Alignment Length
      769 bp
    • CIGAR string
      9H3MN13MN14MN4MI2MNMDN6MN10MN3MN9MNMN3MN2MN3MDMIN7M2N7MI2MNMD2MN5MN2MN20MN2MIMNMD2MN5MN8MN11M2N3MD4MI2MN7MN3MN2MN22MIMD26MN5MI2MD21MN8MN2MN2MN2MNMN9MDNMI3MNMN5MN11MN6MN2MN15M2N30MN2MN3MNMN8MN8MN9MN2MN4MDMNMI3MD2MN2MN2MI2MN38MN12MNMN8MN10MN15MIMNMI2MDMD3M2N4MN2MIMD16M2N2MIM2N2D3MI3MNMN4MN2MNMN15MN8MN2MNM4N8MD2MNMD2MD2MNI9MIMI3MN8MN8MN4MN4MIMD14MIMD2MN9MN4M mismatches: 91 - insertions: 20 - deletions: 20
  • Kitasatospora setae KM-6054

    Kitasatospora setae KM-6054

    • Public DB hit
      GI:311893446
      AP010968
    • Hit length
      8,783,278 bp
    • E Value
      5.18E-121
    • BLAST Score
      444.3 bits
    • Similarity
      77.94%
    • Coverage
      99.34%
    • Alignment (schematic)

      SEQ ID NO 5
      99.34% cov
      AP010968
      0.01% cov
    • Alignment Length
      775 bp
    • CIGAR string
      4MN3MN3MN4MN11MN2MN5MN2MN4MI2MNMDN13MN3MN2M2N5MN3M2N2MINMD2MN4M2NMNMN2MINMD5MN2M2NMINMDN5MN2MN16MI2MD2N3MIMD3MN14MN3MN2MN4MN6MD3MNMI2MN2MNMN36MN10MN12MN17MN15MNMN2MN2MN4MDMI2MN6MN4MNMN2MN3MN3MND3MI2MN6MN2MN14M3N8M2NMN3MN7M2N2MN2MD6MI2MN20MD4MI5MN2MD2MIMDMI2MNMD4M2NMI2MN14MN3MN4MN7MN6MN8MNMI2MND4M2N3MN7MNM2N4MD2MI5M2N2MN3MNMN3M2N4MN2M2N14MNMN4M2ND4MIMNMNMN7MNMN11MN2MN6M3N3MNM5N9MNDMN2MDMD2MI7MNIMI3MN8MN8MN4M2N19MN2MIMD6MI3M5H mismatches: 128 - insertions: 22 - deletions: 21
Occurrence
27 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
6
Length
755
Type
nucleotide
Locations
Drawings

Declared organism:
Streptomyces hygroscopicus

Determined organism:
  • Streptomyces rapamycinicus

    Streptomyces rapamycinicus

    • Public DB hit
      GI:987088
      X86780
    • Hit length
      107,379 bp
    • E Value
      0E0
    • BLAST Score
      1,395.3 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      X86780
      0.7% cov
    • Alignment Length
      755 bp
    • CIGAR string
      755M mismatches: 0 - insertions: 0 - deletions: 0
  • Streptomyces collinus Tu 365

    Streptomyces collinus Tu 365

    • Public DB hit
      GI:164511408
      AM746336
    • Hit length
      132,542 bp
    • E Value
      1.03E-177
    • BLAST Score
      632.7 bits
    • Similarity
      82.47%
    • Coverage
      98.81%
    • Alignment (schematic)

      SEQ ID NO 6
      98.81% cov
      AM746336
      0.57% cov
    • Alignment Length
      770 bp
    • CIGAR string
      9H3MN6MN6MN14MN4MI2MNMDN6MN10MN3MN9MNMN3MN2MN3MDMIN7M2N7MI2MNMD2MN5MN2MN20MNM2D3MI2MDMI5MI6MNMN11M2N3MD4MI2MN7MN3MN2MN22MIMD26MN5MI2MD21MN8MN2MN2MN2MNMN9MDNMI3MNMN5MN11MN6MN2MN15M2N30MN2MN3MNMN8MN8MN9MN2MN4MDMNMI3MD2MN2MN2MI2MN38MN12MNMN8MN10MN15MIMNMI2MDMD3M2N4MN2MIMD16M2N2MIM2N2D3MI3MNMN4MN2MNMN15MN8MN2MNM4N8MD2MNMD2MD2MNI9MIMN2MNI8MN8MI4MI4MIMN13MIMD2MN9MN4M mismatches: 90 - insertions: 24 - deletions: 21
  • Kitasatospora setae KM-6054

    Kitasatospora setae KM-6054

    • Public DB hit
      GI:311893446
      AP010968
    • Hit length
      8,783,278 bp
    • E Value
      4.04E-112
    • BLAST Score
      414.8 bits
    • Similarity
      77.29%
    • Coverage
      99.34%
    • Alignment (schematic)

      SEQ ID NO 6
      99.34% cov
      AP010968
      0.01% cov
    • Alignment Length
      775 bp
    • CIGAR string
      4MN3MN3MN4MNMN9MN2MN5MN2MN4MI2MNMDN13MN3MN2M2N5MN3M2N2MINMD2MN4M2NMNMN2MINMD5MN2M2NMINMDN5MN2MN16MI2MD2N3MIMD3MN3MN8MNMN3MN2MN4MN6MD3MNMI2MN2MNMN36MN10MN12MN17MN15MNMN2MN2MN4MDMI2MN6MN4MNMN2MN3MN3MND3MI2MN6MN2MN14M3N8M2NMN3MN7M2N2MN2MD6MI2MN20MD4MI5MN2MD2MIMDMI2MNMD4M2NMI2MN14MN3MN4MN7MN6MN8MNMI2MND4M2N3MN7MNM2N4MD2MI5M2N2MN3MNMN3M2N4MN2M2N14MNMN4M2ND4MIMNMNMN7MNMN11MN2MN6M3N3MNM5N9MNDMN2MDMD2MI7MNIMN2MNI8MN8MI4MNI6MI12MN2MIMD6MI3M5H mismatches: 130 - insertions: 25 - deletions: 21
Occurrence
27 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
7
Length
318
Type
peptide
Locations
Drawings

Declared organism:
Streptomyces hygroscopicus

Determined organism:
  • Streptomyces rapamycinicus

    Streptomyces rapamycinicus

    • Public DB hit
      GI:987106
      CAA60466
    • Hit length
      317 aa
    • E Value
      2.13E-179
    • BLAST Score
      633.3 bits
    • Similarity
      98.11%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      CAA60466
      100% cov
    • Alignment Length
      318 aa
    • CIGAR string
      11MNDMN6MN172MN2MN48MN71M mismatches: 6 - insertions: 0 - deletions: 1
  • Streptomyces collinus Tu 365

    Streptomyces collinus Tu 365

    • Public DB hit
      GI:164511441
      CAN89642
    • Hit length
      318 aa
    • E Value
      3.7E-141
    • BLAST Score
      506.1 bits
    • Similarity
      87.42%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      CAN89642
      100% cov
    • Alignment Length
      318 aa
    • CIGAR string
      MN4MN4MNMN8M2NM5N2M2N9MN2M2NM2NMN5M2NM4N11M2N18MN2M2NM2N9MN12MN8MN3MNMNMN3MN2MN10MN11MN9MN5MN10MN12M2N2MN2MNMNMN3M2N3MNM2N11MNM2NMN2M2N4MNMN2MNMN4M2N3MN2MNMN2MN3MN8MNM2N4MN4MN4M mismatches: 78 - insertions: 0 - deletions: 0
  • Frankia sp. CcI3

    Frankia sp. CcI3

    • Public DB hit
      GI:86739822
      YP_480222
    • Hit length
      319 aa
    • E Value
      6.89E-125
    • BLAST Score
      452.2 bits
    • Similarity
      81.45%
    • Coverage
      99.69%
    • Alignment (schematic)

      SEQ ID NO 7
      99.69% cov
      YP_480222
      99.69% cov
    • Alignment Length
      318 aa
    • CIGAR string
      M6N6MN5MNM2NM5N3MNINMN3MN3MN2M2N4MN5M2NMNMNMN2MN6MNMN10MN7MN2M3N11MN9M4N8MNMN3MNMN3MNMNMNMN2MN4MN3MNMN2M2N8MN2MN7M2N3MN3MNMN9M2N4MNMN2M2NMN2MN6MN4M2N4MN3M3N2M2N4M2N2M2NMN4M2N3MN2MN5M4N3MNMN2M4N4MN4MN3M1H mismatches: 100 - insertions: 1 - deletions: 0
  • Kitasatospora setae KM-6054

    Kitasatospora setae KM-6054

    • Public DB hit
      GI:311900399
      BAJ32807
    • Hit length
      319 aa
    • E Value
      3.15E-123
    • BLAST Score
      446.8 bits
    • Similarity
      80.57%
    • Coverage
      98.74%
    • Alignment (schematic)

      SEQ ID NO 7
      98.74% cov
      BAJ32807
      98.43% cov
    • Alignment Length
      314 aa
Occurrence
27 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
8
Length
317
Type
peptide
Locations
Drawings

Declared organism:
Streptomyces hygroscopicus

Determined organism:
  • Streptomyces rapamycinicus

    Streptomyces rapamycinicus

    • Public DB hit
      GI:987106
      CAA60466
    • Hit length
      317 aa
    • E Value
      0E0
    • BLAST Score
      651.7 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      CAA60466
      100% cov
    • Alignment Length
      317 aa
    • CIGAR string
      317M mismatches: 0 - insertions: 0 - deletions: 0
  • Streptomyces collinus Tu 365

    Streptomyces collinus Tu 365

    • Public DB hit
      GI:164511441
      CAN89642
    • Hit length
      318 aa
    • E Value
      7.49E-136
    • BLAST Score
      488.4 bits
    • Similarity
      85.53%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      CAN89642
      100% cov
    • Alignment Length
      318 aa
    • CIGAR string
      MN4MN5MI2N6M3NM5N2M2N9MN2M2NM2NMN5M2NM4N11M2N18MN2M2NM2N9MN12MN8MN3MNMNMN3MN2MN10MN11MN9MN5MN4MN2MN2MN12M2N2MN2MNMNMN3M2N3MNM2N9MNMNM2NMN2M2N4MNMN2MNMN4M2N3MN2MNMN2MN3MN8MNM2N4MN4MN4M mismatches: 82 - insertions: 1 - deletions: 0
  • Frankia sp. CcI3

    Frankia sp. CcI3

    • Public DB hit
      GI:86739822
      YP_480222
    • Hit length
      319 aa
    • E Value
      1.9E-120
    • BLAST Score
      437.6 bits
    • Similarity
      80.19%
    • Coverage
      99.68%
    • Alignment (schematic)

      SEQ ID NO 8
      99.68% cov
      YP_480222
      99.69% cov
    • Alignment Length
      318 aa
    • CIGAR string
      M6N4MNI2N4MN2MNM5N3MNINMN3MN3MN2M2N4MN5M2NMNMNMN2MN6MNMN10MN7MN2M3N11MN9M4N8MNMN3MNMN3MNMNMNMN2MN4MN3MNMN2M2N8MN2MN7M2NMNM2N2MNMN9M2N4MNMN2M2NMN2MN6MN4M2N3M2N3M3N2M2N4M2N2M2NMN4M2N3MN2MN5M4N3MNMN2M4N4MN4MN3M1H mismatches: 104 - insertions: 2 - deletions: 0
  • Kitasatospora setae KM-6054

    Kitasatospora setae KM-6054

    • Public DB hit
      GI:311900399
      BAJ32807
    • Hit length
      319 aa
    • E Value
      3.41E-117
    • BLAST Score
      426.4 bits
    • Similarity
      78.66%
    • Coverage
      98.74%
    • Alignment (schematic)

      SEQ ID NO 8
      98.74% cov
      BAJ32807
      98.43% cov
    • Alignment Length
      314 aa
Occurrence
27 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
9
Length
300
Type
nucleotide
Locations
Drawings

Declared organism:
Streptomyces hygroscopicus

Determined organism:
  • Streptomyces rapamycinicus

    Streptomyces rapamycinicus

    • Public DB hit
      GI:987088
      X86780
    • Hit length
      107,379 bp
    • E Value
      4E-143
    • BLAST Score
      516.3 bits
    • Similarity
      97.67%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      X86780
      0.28% cov
    • Alignment Length
      300 bp
    • CIGAR string
      47MN5MN21MN51MN19MN34MN101MN15M mismatches: 7 - insertions: 0 - deletions: 0
Occurrence
27 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
10
Length
300
Type
nucleotide
Locations
Drawings

Declared organism:
Streptomyces hygroscopicus

Determined organism:
  • Streptomyces rapamycinicus

    Streptomyces rapamycinicus

    • Public DB hit
      GI:987088
      X86780
    • Hit length
      107,379 bp
    • E Value
      8.54E-150
    • BLAST Score
      538.5 bits
    • Similarity
      99%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      X86780
      0.28% cov
    • Alignment Length
      301 bp
    • CIGAR string
      209MND3MI86M mismatches: 1 - insertions: 1 - deletions: 1
  • Streptomyces hygroscopicus subsp. ascomyceticus

    Streptomyces hygroscopicus subsp. ascomyceticus

    • Public DB hit
      GI:9280381
      AF235504
    • Hit length
      77,534 bp
    • E Value
      2.13E-46
    • BLAST Score
      195 bits
    • Similarity
      79.1%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      AF235504
      0.39% cov
    • Alignment Length
      311 bp
    • CIGAR string
      6MNMN3MN4MN3MD2N3MI6MN9MNMNMN5MDMI29M3NMD2MI11MN3M2N2MDMI2MN12MN4MN7MI2MDMN2MN5MN2MN5M3N7MND2MI4MNMN9MDMD2M2I10MNMND3MI4M2N2MNM2I2MDMD4MN21MN4MN13MNMN2MN4MN6MN4MN3M mismatches: 43 - insertions: 11 - deletions: 11
Occurrence
27 times in PatSeqDB
Tools
PatSeq Finder

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