Novel Endoribonuclease

  • Published: Jul 23, 2008
  • Earliest Priority: Sep 21 2005
  • Family: 9
  • Cited Works: 0
  • Cited by: 4
  • Cites: 0
  • Sequences: 17
  • Additional Info:
Data obtained from: EPO Sequence Listings
17 sequences found in this patent (in total)

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Download sequences in fasta format: 1 peptide 16 DNAs

Displaying 1 - 10 of 17 sequences

SEQ ID NO
Length
Sequence Type
Locations
Declared organism
Determined organism
Occurrence
Tools
SEQ ID NO
1
Length
138
Sequence Type
peptide
Locations
Undetermined
Declared organism
Pyrococcus horikoshii ATCC 700860
Determined organism
  • Pyrococcus horikoshii OT3

    Pyrococcus horikoshii OT3

    • Public DB hit
      GI:14591007
      NP_143082
    • Hit length
      138 aa
    • E Value
      2.9E-72
    • BLAST Score
      275.4 bits
    • Similarity
      99.28%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      NP_143082
      100% cov
    • Alignment Length
      138 aa
    • CIGAR string
      27MN110M mismatches: 1 - insertions: 0 - deletions: 0
Occurrence
4 times in PatSeqDB
Tools
SEQ ID NO
2
Length
414
Sequence Type
DNA
Locations
Undetermined
Declared organism
Pyrococcus horikoshii ATCC 700860
Determined organism
  • Pyrococcus horikoshii OT3

    Pyrococcus horikoshii OT3

    • Public DB hit
      GI:47118297
      BA000001
    • Hit length
      1,738,505 bp
    • E Value
      0E0
    • BLAST Score
      760.1 bits
    • Similarity
      99.76%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      BA000001
      0.02% cov
    • Alignment Length
      414 bp
    • CIGAR string
      82MN331M mismatches: 1 - insertions: 0 - deletions: 0
Occurrence
4 times in PatSeqDB
Tools
SEQ ID NO
3
Length
36
Sequence Type
DNA
Locations
Undetermined
Declared organism
Artificial
Determined organism
Occurrence
4 times in PatSeqDB
Tools
SEQ ID NO
4
Length
30
Sequence Type
DNA
Locations
Undetermined
Declared organism
Artificial
Determined organism
Occurrence
4 times in PatSeqDB
Tools
SEQ ID NO
5
Length
12
Sequence Type
DNA
Locations
Undetermined
Declared organism
Artificial
Determined organism
Occurrence
5 times in PatSeqDB
Tools
SEQ ID NO
6
Length
12
Sequence Type
DNA
Locations
Undetermined
Declared organism
Artificial
Determined organism
Occurrence
5 times in PatSeqDB
Tools
SEQ ID NO
7
Length
21
Sequence Type
DNA
Locations
Undetermined
Declared organism
Artificial
Determined organism
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332225942
      XM_003262100
      1 of 2 hits reported for Nomascus leucogenys.
    • Hit length
      2,649 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      XM_003262100
      0.79% cov
    • Alignment Length
      21 bp
    • CIGAR string
      21M mismatches: 0 - insertions: 0 - deletions: 0
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:297702366
      XM_002828107
      1 of 2 hits reported for Pongo abelii.
    • Hit length
      3,498 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      XM_002828107
      0.6% cov
    • Alignment Length
      21 bp
    • CIGAR string
      21M mismatches: 0 - insertions: 0 - deletions: 0
  • Bos taurus

    Bos taurus

    • Public DB hit
      GI:297489683
      XM_002697727
      1 of 4 hits reported for Bos taurus.
    • Hit length
      2,281 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      XM_002697727
      0.92% cov
    • Alignment Length
      21 bp
    • CIGAR string
      21M mismatches: 0 - insertions: 0 - deletions: 0
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:297275071
      XM_002800887
      1 of 2 hits reported for Macaca mulatta.
    • Hit length
      3,189 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      XM_002800887
      0.66% cov
    • Alignment Length
      21 bp
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:40288196
      NM_005257
      1 of 8 hits reported for Homo sapiens.
    • Hit length
      3,494 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      NM_005257
      0.6% cov
    • Alignment Length
      21 bp
  • Sus scrofa

    Sus scrofa

    • Public DB hit
      GI:47523717
      NM_214328
    • Hit length
      2,643 bp
    • E Value
      6.21E0
    • BLAST Score
      34.2 bits
    • Similarity
      95.24%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      NM_214328
      0.79% cov
    • Alignment Length
      21 bp
Occurrence
2 times in PatSeqDB
Tools
SEQ ID NO
8
Length
25
Sequence Type
DNA
Locations
Undetermined
Declared organism
Artificial
Determined organism
Occurrence
2 times in PatSeqDB
Tools
SEQ ID NO
9
Length
21
Sequence Type
DNA
Locations
Undetermined
Declared organism
Artificial
Determined organism
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:160358346
      NG_007066
      1 of 7 hits reported for Homo sapiens.
    • Hit length
      104,953 bp
    • E Value
      3.98E-1
    • BLAST Score
      38.2 bits
    • Similarity
      100%
    • Coverage
      90.48%
    • Alignment (schematic)

      SEQ ID NO 9
      90.48% cov
      NG_007066
      0.02% cov
    • Alignment Length
      19 bp
    • CIGAR string
      19M2H mismatches: 0 - insertions: 0 - deletions: 0
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332242181
      XM_003270215
      1 of 2 hits reported for Nomascus leucogenys.
    • Hit length
      3,842 bp
    • E Value
      3.98E-1
    • BLAST Score
      38.2 bits
    • Similarity
      100%
    • Coverage
      90.48%
    • Alignment (schematic)

      SEQ ID NO 9
      90.48% cov
      XM_003270215
      0.49% cov
    • Alignment Length
      19 bp
    • CIGAR string
      19M2H mismatches: 0 - insertions: 0 - deletions: 0
  • Meleagris gallopavo

    Meleagris gallopavo

    • Public DB hit
      GI:326914247
      XM_003203390
      1 of 2 hits reported for Meleagris gallopavo.
    • Hit length
      2,949 bp
    • E Value
      3.98E-1
    • BLAST Score
      38.2 bits
    • Similarity
      100%
    • Coverage
      90.48%
    • Alignment (schematic)

      SEQ ID NO 9
      90.48% cov
      XM_003203390
      0.64% cov
    • Alignment Length
      19 bp
    • CIGAR string
      19M2H mismatches: 0 - insertions: 0 - deletions: 0
  • Ailuropoda melanoleuca

    Ailuropoda melanoleuca

    • Public DB hit
      GI:301782102
      XM_002926422
      1 of 2 hits reported for Ailuropoda melanoleuca.
    • Hit length
      3,072 bp
    • E Value
      3.98E-1
    • BLAST Score
      38.2 bits
    • Similarity
      100%
    • Coverage
      90.48%
    • Alignment (schematic)

      SEQ ID NO 9
      90.48% cov
      XM_002926422
      0.62% cov
    • Alignment Length
      19 bp
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:297693759
      XM_002824126
      1 of 4 hits reported for Pongo abelii.
    • Hit length
      3,717 bp
    • E Value
      3.98E-1
    • BLAST Score
      38.2 bits
    • Similarity
      100%
    • Coverage
      90.48%
    • Alignment (schematic)

      SEQ ID NO 9
      90.48% cov
      XM_002824126
      0.51% cov
    • Alignment Length
      19 bp
  • Callithrix jacchus

    Callithrix jacchus

    • Public DB hit
      GI:296203618
      XM_002748923
      1 of 2 hits reported for Callithrix jacchus.
    • Hit length
      3,288 bp
    • E Value
      3.98E-1
    • BLAST Score
      38.2 bits
    • Similarity
      100%
    • Coverage
      90.48%
    • Alignment (schematic)

      SEQ ID NO 9
      90.48% cov
      XM_002748923
      0.58% cov
    • Alignment Length
      19 bp
  • Equus caballus

    Equus caballus

    • Public DB hit
      GI:194221806
      XM_001493600
      1 of 2 hits reported for Equus caballus.
    • Hit length
      3,480 bp
    • E Value
      3.98E-1
    • BLAST Score
      38.2 bits
    • Similarity
      100%
    • Coverage
      90.48%
    • Alignment (schematic)

      SEQ ID NO 9
      90.48% cov
      XM_001493600
      0.55% cov
    • Alignment Length
      19 bp
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:114649290
      XM_509601
    • Hit length
      3,839 bp
    • E Value
      3.98E-1
    • BLAST Score
      38.2 bits
    • Similarity
      100%
    • Coverage
      90.48%
    • Alignment (schematic)

      SEQ ID NO 9
      90.48% cov
      XM_509601
      0.49% cov
    • Alignment Length
      19 bp
  • Canis lupus familiaris

    Canis lupus familiaris

    • Public DB hit
      GI:66472890
      NM_001020811
    • Hit length
      2,982 bp
    • E Value
      3.98E-1
    • BLAST Score
      38.2 bits
    • Similarity
      100%
    • Coverage
      90.48%
    • Alignment (schematic)

      SEQ ID NO 9
      90.48% cov
      NM_001020811
      0.64% cov
    • Alignment Length
      19 bp
  • Sus scrofa

    Sus scrofa

    • Public DB hit
      GI:237673295
      CU466532
    • Hit length
      168,878 bp
    • E Value
      3.98E-1
    • BLAST Score
      38.2 bits
    • Similarity
      100%
    • Coverage
      90.48%
    • Alignment (schematic)

      SEQ ID NO 9
      90.48% cov
      CU466532
      0.01% cov
    • Alignment Length
      19 bp
  • Danio rerio

    Danio rerio

    • Public DB hit
      GI:215262996
      CU855944
    • Hit length
      90,800 bp
    • E Value
      3.98E-1
    • BLAST Score
      38.2 bits
    • Similarity
      100%
    • Coverage
      90.48%
    • Alignment (schematic)

      SEQ ID NO 9
      90.48% cov
      CU855944
      0.02% cov
    • Alignment Length
      19 bp
Occurrence
3 times in PatSeqDB
Tools
SEQ ID NO
10
Length
30
Sequence Type
DNA
Locations
Undetermined
Declared organism
Artificial
Determined organism
Occurrence
3 times in PatSeqDB
Tools

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