Pathogenic Protein

  • Published: Sep 18, 2008
  • Earliest Priority: Mar 09 2007
  • Family: 2
  • Cited Works: 2
  • Cited by: 0
  • Cites: 2
  • Sequences: 199
  • Additional Info: Cited Works Full text
Data obtained from: EMBL-EBI Pat DDBJ Pat NCBI GenBank (EBI)
199 sequences found in this patent (in total)

Filter sequences

Clear
Download sequences in fasta format: 9 peptides 190 DNAs

Displaying 1 - 10 of 199 sequences

SEQ ID NO
Length
Sequence Type
Locations
Declared organism
Determined organism
Occurrence
Tools
SEQ ID NO
1
Length
14
Sequence Type
DNA
Locations
Fulltext
Declared organism
Artificial
Determined organism
Occurrence
Tools
SEQ ID NO
2
Length
14
Sequence Type
DNA
Locations
Claims, Fulltext
Declared organism
Artificial
Determined organism
Occurrence
Tools
SEQ ID NO
3
Length
199
Sequence Type
peptide
Locations
Fulltext
Declared organism
Mycobacterium tuberculosis
Determined organism
Occurrence
2 times in PatSeqDB
  • 2 in this document
Tools
SEQ ID NO
4
Length
199
Sequence Type
peptide
Locations
Claims, Fulltext
Declared organism
Mycobacterium tuberculosis variant bovis
Determined organism
Occurrence
2 times in PatSeqDB
  • 2 in this document
Tools
SEQ ID NO
5
Length
200
Sequence Type
peptide
Locations
Claims, Fulltext
Declared organism
Mycobacterium marinum
Determined organism
Occurrence
2 times in PatSeqDB
  • 2 in this document
Tools
SEQ ID NO
6
Length
200
Sequence Type
peptide
Locations
Claims, Fulltext
Declared organism
Mycobacterium ulcerans
Determined organism
Occurrence
2 times in PatSeqDB
  • 2 in this document
Tools
SEQ ID NO
7
Length
248
Sequence Type
peptide
Locations
Claims, Fulltext
Declared organism
Mycobacterium avium subsp. paratuberculosis
Determined organism
  • Mycobacterium avium subsp. paratuberculosis K-10

    Mycobacterium avium subsp. paratuberculosis K-10

    • Public DB hit
      GI:41406589
      NP_959425
    • Hit length
      248 aa
    • E Value
      5.31E-141
    • BLAST Score
      505 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      NP_959425
      100% cov
    • Alignment Length
      248 aa
    • CIGAR string
      N247M mismatches: 1 - insertions: 0 - deletions: 0
  • Mycobacterium avium subsp. paratuberculosis S397

    Mycobacterium avium subsp. paratuberculosis S397

    • Public DB hit
      GI:336458485
      EGO37458
    • Hit length
      225 aa
    • E Value
      1.02E-125
    • BLAST Score
      454.1 bits
    • Similarity
      100%
    • Coverage
      90.73%
    • Alignment (schematic)

      SEQ ID NO 7
      90.73% cov
      EGO37458
      100% cov
    • Alignment Length
      225 aa
    • CIGAR string
      23H225M mismatches: 0 - insertions: 0 - deletions: 0
  • Mycobacterium tuberculosis KZN 605

    Mycobacterium tuberculosis KZN 605

    • Public DB hit
      GI:289555838
      ZP_06445048
    • Hit length
      278 aa
    • E Value
      1.06E-117
    • BLAST Score
      427.6 bits
    • Similarity
      90.28%
    • Coverage
      99.6%
    • Alignment (schematic)

      SEQ ID NO 7
      99.6% cov
      ZP_06445048
      86.33% cov
    • Alignment Length
      247 aa
    • CIGAR string
      3MNM2N5MN4MN2MNMNM7D7NM3NM2N2MN2MN81MNM2NMN58MN46MNM2N1H mismatches: 29 - insertions: 0 - deletions: 7
  • Mycobacterium tuberculosis F11

    Mycobacterium tuberculosis F11

    • Public DB hit
      GI:148824779
      YP_001289534
    • Hit length
      295 aa
    • E Value
      1.1E-117
    • BLAST Score
      427.6 bits
    • Similarity
      90.28%
    • Coverage
      99.6%
    • Alignment (schematic)

      SEQ ID NO 7
      99.6% cov
      YP_001289534
      81.36% cov
    • Alignment Length
      247 aa
  • Mycobacterium tuberculosis str. Haarlem

    Mycobacterium tuberculosis str. Haarlem

    • Public DB hit
      GI:254366139
      ZP_04982183
    • Hit length
      243 aa
    • E Value
      2.77E-117
    • BLAST Score
      426.4 bits
    • Similarity
      90.28%
    • Coverage
      99.6%
    • Alignment (schematic)

      SEQ ID NO 7
      99.6% cov
      ZP_04982183
      98.77% cov
    • Alignment Length
      247 aa
  • Mycobacterium tuberculosis CDC1551

    Mycobacterium tuberculosis CDC1551

    • Public DB hit
      GI:15843187
      NP_338224
    • Hit length
      243 aa
    • E Value
      3.61E-117
    • BLAST Score
      426 bits
    • Similarity
      89.88%
    • Coverage
      99.6%
    • Alignment (schematic)

      SEQ ID NO 7
      99.6% cov
      NP_338224
      98.77% cov
    • Alignment Length
      247 aa
  • Mycobacterium parascrofulaceum ATCC BAA-614

    Mycobacterium parascrofulaceum ATCC BAA-614

    • Public DB hit
      GI:296166623
      ZP_06849051
    • Hit length
      219 aa
    • E Value
      6.99E-113
    • BLAST Score
      411.8 bits
    • Similarity
      98.13%
    • Coverage
      86.29%
    • Alignment (schematic)

      SEQ ID NO 7
      86.29% cov
      ZP_06849051
      97.72% cov
    • Alignment Length
      214 aa
  • Mycobacterium avium 104

    Mycobacterium avium 104

    • Public DB hit
      GI:118465428
      YP_879865
    • Hit length
      197 aa
    • E Value
      2.94E-108
    • BLAST Score
      396.4 bits
    • Similarity
      100%
    • Coverage
      79.44%
    • Alignment (schematic)

      SEQ ID NO 7
      79.44% cov
      YP_879865
      100% cov
    • Alignment Length
      197 aa
  • Mycobacterium tuberculosis SUMu005

    Mycobacterium tuberculosis SUMu005

    • Public DB hit
      GI:308372676
      ZP_07429472
    • Hit length
      219 aa
    • E Value
      3.68E-108
    • BLAST Score
      396 bits
    • Similarity
      95.73%
    • Coverage
      85.08%
    • Alignment (schematic)

      SEQ ID NO 7
      85.08% cov
      ZP_07429472
      96.35% cov
    • Alignment Length
      211 aa
  • Mycobacterium ulcerans Agy99

    Mycobacterium ulcerans Agy99

    • Public DB hit
      GI:118619324
      YP_907656
    • Hit length
      200 aa
    • E Value
      5.23E-106
    • BLAST Score
      388.7 bits
    • Similarity
      99.49%
    • Coverage
      79.03%
    • Alignment (schematic)

      SEQ ID NO 7
      79.03% cov
      YP_907656
      98% cov
    • Alignment Length
      196 aa
  • Mycobacterium intracellulare ATCC 13950

    Mycobacterium intracellulare ATCC 13950

    • Public DB hit
      GI:254822724
      ZP_05227725
    • Hit length
      199 aa
    • E Value
      1.3E-105
    • BLAST Score
      387.5 bits
    • Similarity
      98.98%
    • Coverage
      79.03%
    • Alignment (schematic)

      SEQ ID NO 7
      79.03% cov
      ZP_05227725
      98.49% cov
    • Alignment Length
      196 aa
  • Mycobacterium tuberculosis 94_M4241A

    Mycobacterium tuberculosis 94_M4241A

    • Public DB hit
      GI:298527053
      ZP_07014462
    • Hit length
      201 aa
    • E Value
      4.04E-105
    • BLAST Score
      386 bits
    • Similarity
      97.98%
    • Coverage
      79.84%
    • Alignment (schematic)

      SEQ ID NO 7
      79.84% cov
      ZP_07014462
      98.51% cov
    • Alignment Length
      198 aa
  • Mycobacterium tuberculosis H37Rv

    Mycobacterium tuberculosis H37Rv

    • Public DB hit
      GI:330689448
      3MNL_A
    • Hit length
      203 aa
    • E Value
      2.97E-104
    • BLAST Score
      382.9 bits
    • Similarity
      98.47%
    • Coverage
      79.03%
    • Alignment (schematic)

      SEQ ID NO 7
      79.03% cov
      3MNL_A
      96.55% cov
    • Alignment Length
      196 aa
  • Mycobacterium sp. MCS

    Mycobacterium sp. MCS

    • Public DB hit
      GI:108801676
      YP_641873
    • Hit length
      218 aa
    • E Value
      3.07E-104
    • BLAST Score
      382.9 bits
    • Similarity
      97.52%
    • Coverage
      81.45%
    • Alignment (schematic)

      SEQ ID NO 7
      81.45% cov
      YP_641873
      92.66% cov
    • Alignment Length
      202 aa
Occurrence
5 times in PatSeqDB
Tools
SEQ ID NO
8
Length
204
Sequence Type
peptide
Locations
Claims, Fulltext
Declared organism
Mycolicibacterium smegmatis
Determined organism
Occurrence
Tools
SEQ ID NO
9
Length
211
Sequence Type
peptide
Locations
Claims, Fulltext
Declared organism
Nocardia farcinica
Determined organism
  • Nocardia farcinica IFM 10152

    Nocardia farcinica IFM 10152

    • Public DB hit
      GI:54022411
      YP_116653
    • Hit length
      211 aa
    • E Value
      6.02E-147
    • BLAST Score
      419.5 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      YP_116653
      100% cov
    • Alignment Length
      211 aa
    • CIGAR string
      211M mismatches: 0 - insertions: 0 - deletions: 0
  • Nocardia brasiliensis ATCC 700358

    Nocardia brasiliensis ATCC 700358

    • Public DB hit
      GI:378821438
      ZP_09844346
    • Hit length
      211 aa
    • E Value
      1.23E-133
    • BLAST Score
      385.6 bits
    • Similarity
      95.71%
    • Coverage
      99.53%
    • Alignment (schematic)

      SEQ ID NO 9
      99.53% cov
      ZP_09844346
      99.53% cov
    • Alignment Length
      210 aa
    • CIGAR string
      9M4N2MNMN66MN5MN9M2NMN48MN10M2N30M2N11M2N1H mismatches: 18 - insertions: 0 - deletions: 0
  • Nocardia cyriacigeorgica GUH-2

    Nocardia cyriacigeorgica GUH-2

    • Public DB hit
      GI:379706714
      YP_005261919
    • Hit length
      218 aa
    • E Value
      5.33E-133
    • BLAST Score
      384.4 bits
    • Similarity
      92.17%
    • Coverage
      99.53%
    • Alignment (schematic)

      SEQ ID NO 9
      99.53% cov
      YP_005261919
      99.54% cov
    • Alignment Length
      217 aa
    • CIGAR string
      10M7IM3NMN11MN56MN5MNMN7MN62MN31M2N11M2N1H mismatches: 14 - insertions: 7 - deletions: 0
  • Rhodococcus equi 103S

    Rhodococcus equi 103S

    • Public DB hit
      GI:312138116
      YP_004005452
    • Hit length
      212 aa
    • E Value
      5.15E-110
    • BLAST Score
      325.5 bits
    • Similarity
      87.56%
    • Coverage
      99.05%
    • Alignment (schematic)

      SEQ ID NO 9
      99.05% cov
      YP_004005452
      97.17% cov
    • Alignment Length
      209 aa
  • Rhodococcus pyridinivorans AK37

    Rhodococcus pyridinivorans AK37

    • Public DB hit
      GI:363419526
      ZP_09307626
    • Hit length
      219 aa
    • E Value
      6.68E-109
    • BLAST Score
      323.2 bits
    • Similarity
      88.04%
    • Coverage
      99.05%
    • Alignment (schematic)

      SEQ ID NO 9
      99.05% cov
      ZP_09307626
      94.52% cov
    • Alignment Length
      209 aa
  • Rhodococcus opacus M213

    Rhodococcus opacus M213

    • Public DB hit
      GI:388823907
      EIM46465
    • Hit length
      212 aa
    • E Value
      7.12E-107
    • BLAST Score
      317.8 bits
    • Similarity
      91.62%
    • Coverage
      90.52%
    • Alignment (schematic)

      SEQ ID NO 9
      90.52% cov
      EIM46465
      90.09% cov
    • Alignment Length
      191 aa
  • Rhodococcus erythropolis PR4

    Rhodococcus erythropolis PR4

    • Public DB hit
      GI:226304195
      YP_002764153
    • Hit length
      212 aa
    • E Value
      8.67E-107
    • BLAST Score
      317.4 bits
    • Similarity
      87.56%
    • Coverage
      99.05%
    • Alignment (schematic)

      SEQ ID NO 9
      99.05% cov
      YP_002764153
      97.17% cov
    • Alignment Length
      209 aa
  • Rhodococcus opacus B4

    Rhodococcus opacus B4

    • Public DB hit
      GI:226363820
      YP_002781602
      1 of 2 hits reported for Rhodococcus opacus B4.
    • Hit length
      212 aa
    • E Value
      1.76E-106
    • BLAST Score
      316.6 bits
    • Similarity
      91.62%
    • Coverage
      90.52%
    • Alignment (schematic)

      SEQ ID NO 9
      90.52% cov
      YP_002781602
      90.09% cov
    • Alignment Length
      191 aa
  • Rhodococcus jostii RHA1

    Rhodococcus jostii RHA1

    • Public DB hit
      GI:111021454
      YP_704426
      1 of 2 hits reported for Rhodococcus jostii RHA1.
    • Hit length
      212 aa
    • E Value
      1.76E-106
    • BLAST Score
      316.6 bits
    • Similarity
      91.62%
    • Coverage
      90.52%
    • Alignment (schematic)

      SEQ ID NO 9
      90.52% cov
      YP_704426
      90.09% cov
    • Alignment Length
      191 aa
  • Rhodococcus opacus PD630

    Rhodococcus opacus PD630

    • Public DB hit
      GI:356664667
      EHI44760
    • Hit length
      226 aa
    • E Value
      2.71E-106
    • BLAST Score
      316.6 bits
    • Similarity
      91.62%
    • Coverage
      90.52%
    • Alignment (schematic)

      SEQ ID NO 9
      90.52% cov
      EHI44760
      84.51% cov
    • Alignment Length
      191 aa
  • Mycobacterium rhodesiae NBB3

    Mycobacterium rhodesiae NBB3

    • Public DB hit
      GI:375139396
      YP_005000045
    • Hit length
      226 aa
    • E Value
      1.19E-98
    • BLAST Score
      297.4 bits
    • Similarity
      82.33%
    • Coverage
      99.53%
    • Alignment (schematic)

      SEQ ID NO 9
      99.53% cov
      YP_005000045
      95.13% cov
    • Alignment Length
      215 aa
  • Mycobacterium smegmatis str. MC2 155

    Mycobacterium smegmatis str. MC2 155

    • Public DB hit
      GI:118473108
      YP_890266
    • Hit length
      204 aa
    • E Value
      2.46E-98
    • BLAST Score
      295.8 bits
    • Similarity
      85.35%
    • Coverage
      92.89%
    • Alignment (schematic)

      SEQ ID NO 9
      92.89% cov
      YP_890266
      97.06% cov
    • Alignment Length
      198 aa
  • Mycobacterium tusciae JS617

    Mycobacterium tusciae JS617

    • Public DB hit
      GI:374610104
      ZP_09682897
    • Hit length
      223 aa
    • E Value
      3.5E-98
    • BLAST Score
      295.8 bits
    • Similarity
      81.28%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      ZP_09682897
      98.21% cov
    • Alignment Length
      219 aa
  • Mycobacterium chubuense NBB4

    Mycobacterium chubuense NBB4

    • Public DB hit
      GI:392418454
      YP_006455059
    • Hit length
      231 aa
    • E Value
      2.15E-97
    • BLAST Score
      294.3 bits
    • Similarity
      82.65%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      YP_006455059
      94.81% cov
    • Alignment Length
      219 aa
Occurrence
4 times in PatSeqDB
Tools
SEQ ID NO
10
Length
212
Sequence Type
peptide
Locations
Claims, Fulltext
Declared organism
Rhodococcus sp.
Determined organism
Occurrence
Tools

Feedback