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Search for Biological Sequences disclosed in Patents

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Data obtained from: DDBJ Pat NCBI GenBank USPTO Fulltext EMBL-EBI Pat
33 sequences found in this patent (in total)

Displaying 1 - 10 of 33 sequences

SEQ ID NO
Length
Type
Locations
Organisms
Occurrence
Tools
SEQ ID NO
1
Length
1,804
Type
nucleotide
Locations
Claims, Summary

Declared organism:
Not specified

Determined organism:
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:29171681
      NM_002186
      1 of 2 hits reported for Homo sapiens.
    • Hit length
      2,171 bp
    • E Value
      0E0
    • BLAST Score
      2,675.1 bits
    • Similarity
      92.7%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      NM_002186
      89.54% cov
    • Alignment Length
      1,944 bp
    • CIGAR string
      56M2IMI52MI2M2I2MI54MIMIM2I54M3IMI57M2I2M2I54M4I57M2IMIMI57M4I52M2IM2I56M2I2M2I53M4I57M2IM2I54M4I56MIMIMIMI53M4I56M3IMI54MIM2IMIMI52M2I3M3I52M4I2MI27MN28MI2M4I50M5I55M5I56MI2M4I52M4IMI53MNIMI55M5I54M3IM2I56M2IM3I53M3IM2I53M4I2MI53M2IM3I55M5I26M mismatches: 2 - insertions: 140 - deletions: 0
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:297711493
      XM_002832330
    • Hit length
      2,144 bp
    • E Value
      0E0
    • BLAST Score
      2,429.5 bits
    • Similarity
      90.48%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      XM_002832330
      90.35% cov
    • Alignment Length
      1,943 bp
    • CIGAR string
      56M2IMI2MN52M3IMI11MN2MN39MIMIM2I42MN11M3IMI28MN28M4I29MN21MIM2I4MI52MI3M3I61M4I27MN3MN20M2IM2I56M2I2M2I44MN4MN3M4I57M2IM2I3MN50M4I56MIMIMIMI31MN21M4I56M3IMI17MN11MN22MNMIM2IMIMI6MN5MN21MN17M2I3M3I23MN25M2I3M2I2MI56MI2M4I7MI3MD16MN7MN14M5I12MN42M5I10MN19MN25MI2M4I31MN16MN3M4IMI22MN4MN26MDMN2M3D48M5I10MN12MN21MN8M3IM2I24MN31M2IM3I31MN21M3IM2I11MN40MN4IMI17MN36M2IM3I28MN2MD21M2I2MNMN2M3I21M mismatches: 40 - insertions: 139 - deletions: 6
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332260647
      XM_003279348
    • Hit length
      2,137 bp
    • E Value
      0E0
    • BLAST Score
      2,351.9 bits
    • Similarity
      89.85%
    • Coverage
      99.89%
    • Alignment (schematic)

      SEQ ID NO 1
      99.89% cov
      XM_003279348
      90.13% cov
    • Alignment Length
      1,941 bp
    • CIGAR string
      16MN39M2IMI2MN49MI2M2I2MI11MN42MIMIM2I17MN36M3IMI28MN23MN4M4I29MN21MIM2I4MI52MI3M3I29MN27M4I54MIM2IMI55M4I26MN21MN4MIMIM2IMN57M2IM2I3MN34MN15M4I19MN21MN14MIMIMIMI53MNIMI3M2I11MN39M3IMI17MN11MN22MNMIM2IMIMI6MN5MN3MN17MN17M2I3M3I23MN20M2I4MN3M2I2MI56MI2M4I7MI3MD39M5I12MN37MN4M5I8MN11MN35MI2M4I49MN2M4IMI27M3D20M2DM2DM6D48M5I10MN23MNM2N7MN8M3IM2I14MN20MN20M2IM3I13MN39M3IM2I17MN35M4IMI17MN33MN2M2IM3I31MD23M5I4MN19M2H mismatches: 43 - insertions: 139 - deletions: 15
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:297305155
      XM_001100521
    • Hit length
      1,545 bp
    • E Value
      0E0
    • BLAST Score
      1,602.2 bits
    • Similarity
      86.65%
    • Coverage
      80.04%
    • Alignment (schematic)

      SEQ ID NO 1
      80.04% cov
      XM_001100521
      99.16% cov
    • Alignment Length
      1,551 bp
    • CIGAR string
      169H23MN22MN7M3IMI28MN4MN16MN6M2IM2I8MN19MN2MN3MN14MIM2I4MI37MN2MN16M2IM2I23MN25MI3M2IMIN10MN11MN20MN10MIM2IMI14MN7MN32M4I11MN5MN35MIMIM2IMN55M3IMI4M2N33MN16M4I19M2N34MIM3I18MN10MN10MN4MN9M2IM2IMN34MN18M3IMI9MN13M2N5MN12MN7MIM2IMNM2I9MN5MN3MN17MN2MN14M5I26M2N8MN15M2I2MIM2I44MN13MI2MN2IMI3MI2MI3MD5MN10MN12MN9M5I9MN2MN31MN8MNM5I7M2NMN18MN26MI2MN4I5MN30MN10M2N2MN2MN2M2IMI3M3DMD4M2ND3MD3MD19MNDMDM2DM6D6MNMN5MN33MN2IMI3M2I5MN22MN5MN5MN8M3IM2I3MN35MN16M2IM3I20MI2MND7MN21M191H mismatches: 81 - insertions: 107 - deletions: 19
  • Callithrix jacchus

    Callithrix jacchus

    • Public DB hit
      GI:296236856
      XM_002763465
    • Hit length
      1,542 bp
    • E Value
      0E0
    • BLAST Score
      1,338.1 bits
    • Similarity
      83.64%
    • Coverage
      80.04%
    • Alignment (schematic)

      SEQ ID NO 1
      80.04% cov
      XM_002763465
      99.16% cov
    • Alignment Length
      1,553 bp
    • CIGAR string
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mismatches: 121 - insertions: 109 - deletions: 24
Occurrence
4 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
2
Length
1,804
Type
nucleotide
Locations
Summary

Declared organism:
Not specified

Determined organism:
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:29171681
      NM_002186
      1 of 2 hits reported for Homo sapiens.
    • Hit length
      2,171 bp
    • E Value
      0E0
    • BLAST Score
      2,669.5 bits
    • Similarity
      92.64%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      NM_002186
      89.54% cov
    • Alignment Length
      1,944 bp
    • CIGAR string
      56M2IMI52MI2M2I2MI54MIMIM2I54M3IMI57M2I2M2I54M4I57M2IMIMI57M4I52M2IM2I56M2I2M2I53M4I57M2IM2I54M4I56MIMIMIMI53M4I56M3IMI54MIM2IMIMI52M2I3M3I52M4I2MI27MN28MI2M4I50M5I12MN42M5I56MI2M4I52M4IMI53MNIMI55M5I54M3IM2I56M2IM3I53M3IM2I53M4I2MI53M2IM3I55M5I26M mismatches: 3 - insertions: 140 - deletions: 0
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:297711493
      XM_002832330
    • Hit length
      2,144 bp
    • E Value
      0E0
    • BLAST Score
      2,435 bits
    • Similarity
      90.53%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      XM_002832330
      90.35% cov
    • Alignment Length
      1,943 bp
    • CIGAR string
      56M2IMI2MN52M3IMI11MN2MN39MIMIM2I42MN11M3IMI28MN28M4I29MN21MIM2I4MI52MI3M3I61M4I27MN3MN20M2IM2I56M2I2M2I44MN4MN3M4I57M2IM2I3MN50M4I56MIMIMIMI31MN21M4I56M3IMI17MN11MN22MNMIM2IMIMI6MN5MN21MN17M2I3M3I23MN25M2I3M2I2MI56MI2M4I7MI3MD16MN7MN14M5I55M5I10MN19MN25MI2M4I31MN16MN3M4IMI22MN4MN26MDMN2M3D48M5I10MN12MN21MN8M3IM2I24MN31M2IM3I31MN21M3IM2I11MN40MN4IMI17MN36M2IM3I28MN2MD21M2I2MNMN2M3I21M mismatches: 39 - insertions: 139 - deletions: 6
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332260647
      XM_003279348
    • Hit length
      2,137 bp
    • E Value
      0E0
    • BLAST Score
      2,357.4 bits
    • Similarity
      89.9%
    • Coverage
      99.89%
    • Alignment (schematic)

      SEQ ID NO 2
      99.89% cov
      XM_003279348
      90.13% cov
    • Alignment Length
      1,941 bp
    • CIGAR string
      16MN39M2IMI2MN49MI2M2I2MI11MN42MIMIM2I17MN36M3IMI28MN23MN4M4I29MN21MIM2I4MI52MI3M3I29MN27M4I54MIM2IMI55M4I26MN21MN4MIMIM2IMN57M2IM2I3MN34MN15M4I19MN21MN14MIMIMIMI53MNIMI3M2I11MN39M3IMI17MN11MN22MNMIM2IMIMI6MN5MN3MN17MN17M2I3M3I23MN20M2I4MN3M2I2MI56MI2M4I7MI3MD39M5I50MN4M5I8MN11MN35MI2M4I49MN2M4IMI27M3D20M2DM2DM6D48M5I10MN23MNM2N7MN8M3IM2I14MN20MN20M2IM3I13MN39M3IM2I17MN35M4IMI17MN33MN2M2IM3I31MD23M5I4MN19M2H mismatches: 42 - insertions: 139 - deletions: 15
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:297305155
      XM_001100521
    • Hit length
      1,545 bp
    • E Value
      0E0
    • BLAST Score
      1,607.7 bits
    • Similarity
      86.72%
    • Coverage
      80.04%
    • Alignment (schematic)

      SEQ ID NO 2
      80.04% cov
      XM_001100521
      99.16% cov
    • Alignment Length
      1,551 bp
    • CIGAR string
      169H23MN22MN7M3IMI28MN4MN16MN6M2IM2I8MN19MN2MN3MN14MIM2I4MI37MN2MN16M2IM2I23MN25MI3M2IMIN10MN11MN20MN10MIM2IMI14MN7MN32M4I11MN5MN35MIMIM2IMN55M3IMI4M2N33MN16M4I19M2N34MIM3I18MN10MN10MN4MN9M2IM2IMN34MN18M3IMI9MN13M2N5MN12MN7MIM2IMNM2I9MN5MN3MN17MN2MN14M5I26M2N8MN15M2I2MIM2I44MN13MI2MN2IMI3MI2MI3MD5MN10MN12MN9M5I9MN34MN8MNM5I7M2NMN18MN26MI2MN4I5MN30MN10M2N2MN2MN2M2IMI3M3DMD4M2ND3MD3MD19MNDMDM2DM6D6MNMN5MN33MN2IMI3M2I5MN22MN5MN5MN8M3IM2I3MN35MN16M2IM3I20MI2MND7MN21M191H mismatches: 80 - insertions: 107 - deletions: 19
  • Callithrix jacchus

    Callithrix jacchus

    • Public DB hit
      GI:296236856
      XM_002763465
    • Hit length
      1,542 bp
    • E Value
      0E0
    • BLAST Score
      1,343.6 bits
    • Similarity
      83.71%
    • Coverage
      80.04%
    • Alignment (schematic)

      SEQ ID NO 2
      80.04% cov
      XM_002763465
      99.16% cov
    • Alignment Length
      1,553 bp
    • CIGAR string
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mismatches: 120 - insertions: 109 - deletions: 24
Occurrence
4 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
3
Length
1,801
Type
nucleotide
Locations
Summary

Declared organism:
Not specified

Determined organism:
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:29171681
      NM_002186
      1 of 2 hits reported for Homo sapiens.
    • Hit length
      2,171 bp
    • E Value
      0E0
    • BLAST Score
      2,654.8 bits
    • Similarity
      92.54%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      NM_002186
      89.54% cov
    • Alignment Length
      1,944 bp
    • CIGAR string
      56M2IMI52MI2M2I2MI54MIMIM2I54M3IMI57M2I2M2I54M4I57M2IMIMI57M4I52M2IM2I56M2I2M2I53M4I57M2IM2I36M2IMI17MIM3I55M4I56M4I56M2IM2I55M5I54M5I55M4IMI25MN28MI2M4I53M2IM3I55M4IMI53M5I55MIM4I50MN3MIMI54M3I4M2I51M5I55M5I55M4IMI54MIM4I54M4IMI54M5I24M mismatches: 2 - insertions: 143 - deletions: 0
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:297711493
      XM_002832330
    • Hit length
      2,144 bp
    • E Value
      0E0
    • BLAST Score
      2,405.5 bits
    • Similarity
      90.27%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      XM_002832330
      90.35% cov
    • Alignment Length
      1,943 bp
    • CIGAR string
      57MN2I3MI52M2IM2I10MN2MN41MI2M2I2MI38MN13M2IM2I26MN28M2I2M2I27MN26M4I57M2IMIMI57M4I27MN3MN20M2IM2I56M2I2M2I44MN4MN3M4I57M2IM2I3MN32M2IMI17MIM3I55M4I31MN24M4I56M2IM2I14MN11MN22MN5M5I5MN5MN21MN20M5I23MN25MN5M4IMI54MI2M4I7MI3MD16MN7MN17M2IM3I8MN46M4IMI5MN19MN27M5I31MN16MN6MIM4I19MN4MN27MNMDM3D50M3I4M2I4MN12MN21MN11M5I22MN32M5I31MN23M4IMI9MN40MN3MIM4I14MN39M4IMI25MN2MD21MN3MN2I2M3I21M mismatches: 41 - insertions: 142 - deletions: 6
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332260647
      XM_003279348
    • Hit length
      2,137 bp
    • E Value
      0E0
    • BLAST Score
      2,337.1 bits
    • Similarity
      89.72%
    • Coverage
      99.89%
    • Alignment (schematic)

      SEQ ID NO 3
      99.89% cov
      XM_003279348
      90.13% cov
    • Alignment Length
      1,936 bp
    • CIGAR string
      16MN39M2IMI2MN49MI2M2I2MI11MN42MIMIM2I17MN36M3IMI28MN23MN4M4I29MN21MIM2I4MI52MI3M3I29MN27M4I54MIM2IMI55M4I26MN21MN4MIMIM2IMN57M2IM2I3MN32M3I18MIM3I15MN21MN17M4I56M2I2M2I11MN42M2IM2I14MN11MN22MN5M5I5MN5MN3MN17MN20M5I23MN20MNMN2MN5M4IMI54MI2M4I7MI3MD42M2IM3I8MN37MN8M4IMI3MN11MN37M5I49MN5MND2M2NM3NMN4M2ND3MD3MD28MDM3D50M3I4M2I4MN23MNM2N7MN11M5I12MN20MN21M5I13MN41M4IMI15MN38MIM4I14MN33MN5M4IMI28MD25MN2I3M2IMI17M2H mismatches: 52 - insertions: 137 - deletions: 10
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:297305155
      XM_001100521
    • Hit length
      1,545 bp
    • E Value
      0E0
    • BLAST Score
      1,585.5 bits
    • Similarity
      86.5%
    • Coverage
      80.12%
    • Alignment (schematic)

      SEQ ID NO 3
      80.12% cov
      XM_001100521
      99.29% cov
    • Alignment Length
      1,555 bp
    • CIGAR string
      169H23MN22MN7M3IMI28MN4MN16MN6M2IM2I8MN19MN2MN3MN14MIM2I4MI37MN2MN16M2IM2I23MN25MI3M2IMIN10MN11MN20MN10MIM2IMI14MN7MN32M4I11MN5MN35MIMIM2IMN57M2IM2I2M2N32MIM2I17MIM3I15M2N36MNM4I15MN10MN10MN4MN13M2I2M2I31MN22M2IM2I5MN13M2N5MN12MN9MN4M2IM3I5MN5MN3MN17MN2MN17M5I23M2N8MN15MN5M4IMI40MN13MI2MN2IMI3MI2MI3MD5MN10MN12MN9MN2M2IM3I5MN2MN31MN8MN5M4IMI2M2NMN18MN28MNM3I2M2I2MN30MN10M2N3M5I27M3D12MNDMDMDM13D6MNMN5MN35M3I3M2I5MN22MN5MN5MN11MN2M5I34MN17M5I20MI2MND7MN23M189H mismatches: 77 - insertions: 112 - deletions: 21
  • Callithrix jacchus

    Callithrix jacchus

    • Public DB hit
      GI:296236856
      XM_002763465
    • Hit length
      1,542 bp
    • E Value
      0E0
    • BLAST Score
      1,290.1 bits
    • Similarity
      83.11%
    • Coverage
      80.12%
    • Alignment (schematic)

      SEQ ID NO 3
      80.12% cov
      XM_002763465
      99.29% cov
    • Alignment Length
      1,557 bp
    • CIGAR string
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mismatches: 123 - insertions: 114 - deletions: 26
Occurrence
4 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
4
Length
1,724
Type
nucleotide
Locations
Claims, Summary

Declared organism:
Not specified

Determined organism:
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:194394224
      NR_024033
      1 of 3 hits reported for Homo sapiens.
    • Hit length
      2,175 bp
    • E Value
      0E0
    • BLAST Score
      2,056.4 bits
    • Similarity
      90.73%
    • Coverage
      88.63%
    • Alignment (schematic)

      SEQ ID NO 4
      88.63% cov
      NR_024033
      74.07% cov
    • Alignment Length
      1,640 bp
    • CIGAR string
      194H29M3IMI57M4I51MIM2I4MI57MD2NMD2MDMIM2NMD41M4I54MIM2IMI49MDMDMDM5DMDN2MDM2DM2D2M4D4M4D2N3M2DNMD16M4I55M3IMI56M4I56MIMIMIMI53M4I56M3IMI54MIM2IMIMI52M4I2MI2MN50M2IM3I54M3IM2I56M3I2MIMI50M5I55M2I3MN2MN48M2I2M3I54M5I54M4IMI54M2IM3I54M5I57M4IMI52M5I55M2H mismatches: 11 - insertions: 112 - deletions: 29
Occurrence
4 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
5
Length
184
Type
nucleotide
Locations
Summary

Declared organism:
Not specified

Determined organism:
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:194394224
      NR_024033
      1 of 8 hits reported for Homo sapiens.
    • Hit length
      2,175 bp
    • E Value
      9.08E-73
    • BLAST Score
      281.8 bits
    • Similarity
      94.24%
    • Coverage
      97.83%
    • Alignment (schematic)

      SEQ ID NO 5
      97.83% cov
      NR_024033
      8.78% cov
    • Alignment Length
      191 bp
    • CIGAR string
      55M2I2MI57MIMIM2I53MI3MIMIMI6M4H mismatches: 0 - insertions: 11 - deletions: 0
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:312151365
      HQ447710
      1 of 2 hits reported for synthetic construct.
    • Hit length
      1,098 bp
    • E Value
      9.08E-73
    • BLAST Score
      281.8 bits
    • Similarity
      94.24%
    • Coverage
      97.83%
    • Alignment (schematic)

      SEQ ID NO 5
      97.83% cov
      HQ447710
      17.4% cov
    • Alignment Length
      191 bp
    • CIGAR string
      55M2I2MI57MIMIM2I53MI3MIMIMI6M4H mismatches: 0 - insertions: 11 - deletions: 0
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:332862076
      XM_001145427
    • Hit length
      1,066 bp
    • E Value
      4.22E-71
    • BLAST Score
      276.3 bits
    • Similarity
      93.72%
    • Coverage
      97.83%
    • Alignment (schematic)

      SEQ ID NO 5
      97.83% cov
      XM_001145427
      17.92% cov
    • Alignment Length
      191 bp
    • CIGAR string
      25MN29M2I2MI54MIMIM2I56MI3MIMIMI6M4H mismatches: 1 - insertions: 11 - deletions: 0
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:297711493
      XM_002832330
    • Hit length
      2,144 bp
    • E Value
      1.96E-69
    • BLAST Score
      270.7 bits
    • Similarity
      93.19%
    • Coverage
      97.83%
    • Alignment (schematic)

      SEQ ID NO 5
      97.83% cov
      XM_002832330
      8.91% cov
    • Alignment Length
      191 bp
    • CIGAR string
      25MN31M3I27MN29MIMIM2I53MI3MIMIMI6M4H mismatches: 2 - insertions: 11 - deletions: 0
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332260647
      XM_003279348
    • Hit length
      2,137 bp
    • E Value
      9.14E-68
    • BLAST Score
      265.2 bits
    • Similarity
      92.67%
    • Coverage
      97.83%
    • Alignment (schematic)

      SEQ ID NO 5
      97.83% cov
      XM_003279348
      8.94% cov
    • Alignment Length
      191 bp
    • CIGAR string
      25MN23MN5M2I2MI27MN26MIMIM2I56MI3MIMIMI6M4H mismatches: 3 - insertions: 11 - deletions: 0
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:297305155
      XM_001100521
    • Hit length
      1,545 bp
    • E Value
      9.27E-58
    • BLAST Score
      232 bits
    • Similarity
      89.53%
    • Coverage
      97.83%
    • Alignment (schematic)

      SEQ ID NO 5
      97.83% cov
      XM_001100521
      12.36% cov
    • Alignment Length
      191 bp
    • CIGAR string
      25MN4MN16MN9M3I7MN19MN2MN3MN19MIMIM2I35MN2MN17MI2MI2MIMI6M4H mismatches: 9 - insertions: 11 - deletions: 0
  • Callithrix jacchus

    Callithrix jacchus

    • Public DB hit
      GI:296236856
      XM_002763465
    • Hit length
      1,542 bp
    • E Value
      4.31E-56
    • BLAST Score
      226.4 bits
    • Similarity
      89.01%
    • Coverage
      97.83%
    • Alignment (schematic)

      SEQ ID NO 5
      97.83% cov
      XM_002763465
      12.39% cov
    • Alignment Length
      191 bp
    • CIGAR string
      30MN18MN7M3I3MN12MN10MN2MN9MN16MIMIM2I5MN28M2N17MI3MIMIMI6M4H mismatches: 10 - insertions: 11 - deletions: 0
Occurrence
4 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
6
Length
482
Type
nucleotide
Locations
Summary

Declared organism:
Not specified

Determined organism:
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:29171681
      NM_002186
      1 of 8 hits reported for Homo sapiens.
    • Hit length
      2,171 bp
    • E Value
      0E0
    • BLAST Score
      725 bits
    • Similarity
      93.05%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      NM_002186
      23.86% cov
    • Alignment Length
      518 bp
    • CIGAR string
      57M3I56M4I56MIM2I3MI52M3IMI55M4I58M4I43M5I11M4I57M3IMI31M mismatches: 0 - insertions: 36 - deletions: 0
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:332862076
      XM_001145427
    • Hit length
      1,066 bp
    • E Value
      0E0
    • BLAST Score
      708.4 bits
    • Similarity
      92.47%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      XM_001145427
      48.59% cov
    • Alignment Length
      518 bp
    • CIGAR string
      57M3IN55M4I54MIM3I55M3I2MI3MN52M4I8MN44M4I47M5I10M2IMIMI57M3IMI31M mismatches: 3 - insertions: 36 - deletions: 0
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332260647
      XM_003279348
      1 of 2 hits reported for Nomascus leucogenys.
    • Hit length
      2,137 bp
    • E Value
      0E0
    • BLAST Score
      686.2 bits
    • Similarity
      91.7%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      XM_003279348
      24.24% cov
    • Alignment Length
      518 bp
    • CIGAR string
      57MNM3I22MN31M4I2MN53MIM2I3MI52MNMI2M3I52M4I58M4I43M5I8MN2M4I15MN4MN36M3IMI31M mismatches: 7 - insertions: 36 - deletions: 0
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:297711493
      XM_002832330
      1 of 2 hits reported for Pongo abelii.
    • Hit length
      2,144 bp
    • E Value
      0E0
    • BLAST Score
      686.2 bits
    • Similarity
      91.7%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      XM_002832330
      24.16% cov
    • Alignment Length
      518 bp
    • CIGAR string
      15MN41M3IN55M4I2MN53MIM2I3MI52M3IMI55M4I4MN3MN49M4I43M5I11M4I15MN4MN36M3IMI31M mismatches: 7 - insertions: 36 - deletions: 0
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:312151365
      HQ447710
      1 of 3 hits reported for synthetic construct.
    • Hit length
      1,098 bp
    • E Value
      2.32E-172
    • BLAST Score
      614.2 bits
    • Similarity
      90.12%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      HQ447710
      43.9% cov
    • Alignment Length
      506 bp
    • CIGAR string
      57M3I56M4I56MIM2I3MI42MIMND2MN3MDMDMD52M4I58M4I43M4DM3D2M2DM5DM3D2M3D41M3IMI31M mismatches: 2 - insertions: 24 - deletions: 24
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:297305155
      XM_001100521
    • Hit length
      1,545 bp
    • E Value
      8.33E-172
    • BLAST Score
      612.4 bits
    • Similarity
      89.17%
    • Coverage
      99.79%
    • Alignment (schematic)

      SEQ ID NO 6
      99.79% cov
      XM_001100521
      33.46% cov
    • Alignment Length
      517 bp
    • CIGAR string
      19MN37M3IN4MN16MN10MN8MN13M4I2MN2MN3MN46MIM2I3MI6MN2MN20MN21M3IMI23MN18MN11MN4I16MN30MN7M2IM2I43MNM5I11M4I20MN36M3IMI23MN6M1H mismatches: 20 - insertions: 36 - deletions: 0
  • Callithrix jacchus

    Callithrix jacchus

    • Public DB hit
      GI:296236856
      XM_002763465
    • Hit length
      1,542 bp
    • E Value
      2.38E-152
    • BLAST Score
      547.7 bits
    • Similarity
      86.9%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      XM_002763465
      33.59% cov
    • Alignment Length
      519 bp
    • CIGAR string
      30MN26M3I5MN18MN13MN12MN4M4I2MN2MN9MN27MN10MIM3I13M2N42MNMI2M3I20MN7MN7MN2MN11MN4I5MNMIMD7MN25MN4MN10M4I17MN3MN21M5I5MI2MIMNMIMI6MN7M2N4MN25MN10M3IMI6MN24M mismatches: 30 - insertions: 37 - deletions: 1
  • Equus caballus

    Equus caballus

    • Public DB hit
      GI:149750973
      XM_001496588
    • Hit length
      1,443 bp
    • E Value
      7.21E-93
    • BLAST Score
      350.1 bits
    • Similarity
      80.27%
    • Coverage
      99.59%
    • Alignment (schematic)

      SEQ ID NO 6
      99.59% cov
      XM_001496588
      35.76% cov
    • Alignment Length
      522 bp
    • CIGAR string
      2H4MD3MI6MN10M2N5MNMN16MINM2IM2N7MNMN5MN3MN17MN11MINMN2M3I3MN2MN4MN21MNMN8MN2MN7MI3M2I2MI10MN5MDMI31MN2MD2MI2MI2MIMN2I2MN6MN4MNMN2MN5MN7MNMN8MN2MDMI2M4I10MN8MN19MND2MI3MN7MIM3I20M2N19MNM5I5MI2MIMIMNMI11MN2M2N4MN4MNMIMD4MN18MN3M3I2MI6M2N5MNMN2MN4MN7M mismatches: 55 - insertions: 42 - deletions: 6
  • Sus scrofa

    Sus scrofa

    • Public DB hit
      GI:311251662
      XM_003124679
    • Hit length
      1,945 bp
    • E Value
      9.53E-77
    • BLAST Score
      296.6 bits
    • Similarity
      78.27%
    • Coverage
      99.79%
    • Alignment (schematic)

      SEQ ID NO 6
      99.79% cov
      XM_003124679
      26.58% cov
    • Alignment Length
      520 bp
    • CIGAR string
      16MN10MNMNMN2M2N5MN2MN8MINM2I2MN9MN9MN2MN4MN5MN3MNMN5MN3MI2MINM2I4MN2MNM2NMN4MN5MN2MN13MN7MN7MIM3I5MN8MN6MN31MN2MD2MI2MI2MI2M2I2MNMN4MN4MN4MN3MNMN9MNMN6MNI2M2N2I2MI4MN5MN6MNMN11MN7MNDMD2MN4M2I3MI2M3I20M2N21M5I8MN2M4I3MN11MN4MN2MNMN6M2N14MN2MNMN2M4I8M2N2MN2MNMN2MN11M1H mismatches: 71 - insertions: 39 - deletions: 3
Occurrence
4 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
7
Length
482
Type
nucleotide
Locations
Summary

Declared organism:
Not specified

Determined organism:
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:194394224
      NR_024033
      1 of 8 hits reported for Homo sapiens.
    • Hit length
      2,175 bp
    • E Value
      0E0
    • BLAST Score
      725 bits
    • Similarity
      93.33%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      NR_024033
      23.26% cov
    • Alignment Length
      510 bp
    • CIGAR string
      57M3I56M4I56MIM2I3MI42MIMND2MN3MDMDMD52M4I58M4I54M4I56M4I33M mismatches: 2 - insertions: 28 - deletions: 4
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:312151365
      HQ447710
      1 of 3 hits reported for synthetic construct.
    • Hit length
      1,098 bp
    • E Value
      0E0
    • BLAST Score
      725 bits
    • Similarity
      93.33%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      HQ447710
      46.08% cov
    • Alignment Length
      510 bp
    • CIGAR string
      57M3I56M4I56MIM2I3MI42MIMND2MN3MDMDMD52M4I58M4I54M4I56M4I33M mismatches: 2 - insertions: 28 - deletions: 4
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:332862076
      XM_001145427
    • Hit length
      1,066 bp
    • E Value
      6.53E-163
    • BLAST Score
      582.8 bits
    • Similarity
      93.58%
    • Coverage
      79.25%
    • Alignment (schematic)

      SEQ ID NO 7
      79.25% cov
      XM_001145427
      37.99% cov
    • Alignment Length
      405 bp
    • CIGAR string
      57M3IN55M4I56MIM2I3MI52MNMI3MI5M2I46M4I8MN49M4I43M100H mismatches: 3 - insertions: 23 - deletions: 0
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332260647
      XM_003279348
    • Hit length
      2,137 bp
    • E Value
      3.04E-161
    • BLAST Score
      577.3 bits
    • Similarity
      93.33%
    • Coverage
      79.25%
    • Alignment (schematic)

      SEQ ID NO 7
      79.25% cov
      XM_003279348
      18.95% cov
    • Alignment Length
      405 bp
    • CIGAR string
      57MNM3I22MN31M4I2MN53MIM2I3MI52MNMI2M3I52M4I58M4I43M100H mismatches: 4 - insertions: 23 - deletions: 0
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:297711493
      XM_002832330
    • Hit length
      2,144 bp
    • E Value
      1.41E-159
    • BLAST Score
      571.7 bits
    • Similarity
      93.09%
    • Coverage
      79.25%
    • Alignment (schematic)

      SEQ ID NO 7
      79.25% cov
      XM_002832330
      18.89% cov
    • Alignment Length
      405 bp
    • CIGAR string
      15MN41M3IN55M4I2MN53MIM2I3MI52M3IMI55M4I4MN3MN49M4I43M100H mismatches: 5 - insertions: 23 - deletions: 0
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:297305155
      XM_001100521
    • Hit length
      1,545 bp
    • E Value
      1.88E-138
    • BLAST Score
      501.6 bits
    • Similarity
      90.07%
    • Coverage
      78.84%
    • Alignment (schematic)

      SEQ ID NO 7
      78.84% cov
      XM_001100521
      26.08% cov
    • Alignment Length
      403 bp
    • CIGAR string
      19MN37M3IN4MN16MN10MN8MN13M4I2MN2MN3MN46MIM2I3MI6MN2MN20MN21M3IMI23MN18MN11MN4I16MN30MN7M2IM2I43M102H mismatches: 17 - insertions: 23 - deletions: 0
  • Callithrix jacchus

    Callithrix jacchus

    • Public DB hit
      GI:296236856
      XM_002763465
    • Hit length
      1,542 bp
    • E Value
      3.19E-126
    • BLAST Score
      460.9 bits
    • Similarity
      88.18%
    • Coverage
      79.25%
    • Alignment (schematic)

      SEQ ID NO 7
      79.25% cov
      XM_002763465
      26.26% cov
    • Alignment Length
      406 bp
    • CIGAR string
      30MN26M3I5MN18MN13MN12MN4M4I2MN2MN9MN27MN10MIM3I13M2N42MNMI2M3I20MN7MN7MN2MN11MN4I5MNMIMD7MN25MN4MN10M4I17MN3MN21M100H mismatches: 23 - insertions: 24 - deletions: 1
  • Equus caballus

    Equus caballus

    • Public DB hit
      GI:149750973
      XM_001496588
    • Hit length
      1,443 bp
    • E Value
      2.63E-82
    • BLAST Score
      315.1 bits
    • Similarity
      82.02%
    • Coverage
      78.42%
    • Alignment (schematic)

      SEQ ID NO 7
      78.42% cov
      XM_001496588
      27.79% cov
    • Alignment Length
      406 bp
    • CIGAR string
      2H4MD3MI6MN10M2N5MNMN16MINM2IM2N7MNMN5MN3MN17MN11MINMN2M3I3MN2MN4MN21MNMN8MN2MN7MI3M2I2MI10MN5MDMI31MN2MD2MI2MI2MIMN2I2MN6MN4MNMN2MN5MN7MNMN8MN2MDMI2M4I10MN8MN19MND2MI3MN7MIM3I20M2N19M102H mismatches: 40 - insertions: 28 - deletions: 5
  • Sus scrofa

    Sus scrofa

    • Public DB hit
      GI:311251662
      XM_003124679
    • Hit length
      1,945 bp
    • E Value
      7.47E-68
    • BLAST Score
      267 bits
    • Similarity
      79.66%
    • Coverage
      79.25%
    • Alignment (schematic)

      SEQ ID NO 7
      79.25% cov
      XM_003124679
      20.82% cov
    • Alignment Length
      408 bp
    • CIGAR string
      16MN10MNMNMN2M2N5MN2MN8MINM2I2MN9MN9MN2MN4MN5MN3MNMN5MN3MI2MINM2I4MN2MNM2NMN4MN5MN2MN13MN7MN7MIM3I5MN8MN6MN31MN2MD2MI2MI2MI2M2I2MNMN4MN4MN4MN3MNMN9MNMN6MNI2M2N2I2MI4MN5MN6MNMN11MN7MNDMD2MN4M2I3MI2M3I20M2N21M100H mismatches: 54 - insertions: 26 - deletions: 3
Occurrence
4 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
8
Length
17
Type
nucleotide
Locations
Detailed Description

Declared organism:
Not specified

Determined organism:
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:261823945
      NG_013238
      1 of 6 hits reported for Homo sapiens.
    • Hit length
      20,237 bp
    • E Value
      4.15E0
    • BLAST Score
      34.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      NG_013238
      0.08% cov
    • Alignment Length
      17 bp
    • CIGAR string
      17M mismatches: 0 - insertions: 0 - deletions: 0
  • Rhodococcus equi 103S

    Rhodococcus equi 103S

    • Public DB hit
      GI:311886853
      FN563149
    • Hit length
      5,043,170 bp
    • E Value
      4.15E0
    • BLAST Score
      34.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      FN563149
      0% cov
    • Alignment Length
      17 bp
    • CIGAR string
      17M mismatches: 0 - insertions: 0 - deletions: 0
  • Mus musculus

    Mus musculus

    • Public DB hit
      GI:12331469
      AC074224
      1 of 2 hits reported for Mus musculus.
    • Hit length
      188,989 bp
    • E Value
      4.15E0
    • BLAST Score
      34.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      AC074224
      0.01% cov
    • Alignment Length
      17 bp
Occurrence
18 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
9
Length
19
Type
nucleotide
Locations
Detailed Description

Declared organism:
Not specified

Determined organism:
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:261823945
      NG_013238
      1 of 4 hits reported for Homo sapiens.
    • Hit length
      20,237 bp
    • E Value
      2.65E-1
    • BLAST Score
      38.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      NG_013238
      0.09% cov
    • Alignment Length
      19 bp
    • CIGAR string
      19M mismatches: 0 - insertions: 0 - deletions: 0
Occurrence
18 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
10
Length
19
Type
nucleotide
Locations
Undetermined

Declared organism:
Not specified

Determined organism:
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:261823945
      NG_013238
      1 of 4 hits reported for Homo sapiens.
    • Hit length
      20,237 bp
    • E Value
      2.65E-1
    • BLAST Score
      38.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      NG_013238
      0.09% cov
    • Alignment Length
      19 bp
    • CIGAR string
      19M mismatches: 0 - insertions: 0 - deletions: 0
Occurrence
18 times in PatSeqDB
Tools
PatSeq Finder

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