Patents
WO 2008/147206 A2

Means And Methods For Classifying Samples Of Multiple Sclerosis Patients

  • Published: Dec 4, 2008
  • Earliest Priority: Jun 01 2007
  • Family: 15
  • Cited Works: 0
  • Cited by: 2
  • Cites: 0
  • Sequences: 25
  • Additional Info: Full text
Patent Application
WO 2008/147206 A2
000-883-892-927-380
Data obtained from: EPO Sequence Listings NCBI GenBank (EBI) DDBJ Pat EMBL-EBI Pat
25 sequences found in this patent (in total)

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Download sequences in fasta format: 25 DNAs

Displaying 1 - 10 of 25 sequences

SEQ ID NO
Length
Sequence Type
Locations
Declared organism
Determined organism
Occurrence
Tools
SEQ ID NO
1
Length
21
Sequence Type
DNA
Locations
Undetermined
Declared organism
Artificial
Determined organism
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:308199420
      NG_027788
      1 of 6 hits reported for Homo sapiens.
    • Hit length
      45,622 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      NG_027788
      0.05% cov
    • Alignment Length
      21 bp
    • CIGAR string
      21M mismatches: 0 - insertions: 0 - deletions: 0
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:332872122
      XM_001171953
      1 of 5 hits reported for Pan troglodytes.
    • Hit length
      2,967 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      XM_001171953
      0.71% cov
    • Alignment Length
      21 bp
    • CIGAR string
      21M mismatches: 0 - insertions: 0 - deletions: 0
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332262788
      XM_003280393
      1 of 6 hits reported for Nomascus leucogenys.
    • Hit length
      2,728 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      XM_003280393
      0.77% cov
    • Alignment Length
      21 bp
    • CIGAR string
      21M mismatches: 0 - insertions: 0 - deletions: 0
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:297707961
      XM_002830704
      1 of 3 hits reported for Pongo abelii.
    • Hit length
      566 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      XM_002830704
      3.71% cov
    • Alignment Length
      21 bp
  • Callithrix jacchus

    Callithrix jacchus

    • Public DB hit
      GI:296232199
      XM_002761438
      1 of 2 hits reported for Callithrix jacchus.
    • Hit length
      1,989 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      XM_002761438
      1.06% cov
    • Alignment Length
      21 bp
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:119226256
      NM_001079693
    • Hit length
      2,045 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      NM_001079693
      1.03% cov
    • Alignment Length
      21 bp
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:325464350
      JF432729
      1 of 2 hits reported for synthetic construct.
    • Hit length
      2,088 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      JF432729
      1.01% cov
    • Alignment Length
      21 bp
Occurrence
6 times in PatSeqDB
Tools
SEQ ID NO
2
Length
24
Sequence Type
DNA
Locations
Undetermined
Declared organism
Artificial
Determined organism
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:308199420
      NG_027788
      1 of 9 hits reported for Homo sapiens.
    • Hit length
      45,622 bp
    • E Value
      6.88E-4
    • BLAST Score
      48.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      NG_027788
      0.05% cov
    • Alignment Length
      24 bp
    • CIGAR string
      24M mismatches: 0 - insertions: 0 - deletions: 0
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:332872122
      XM_001171953
      1 of 7 hits reported for Pan troglodytes.
    • Hit length
      2,967 bp
    • E Value
      6.88E-4
    • BLAST Score
      48.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      XM_001171953
      0.81% cov
    • Alignment Length
      24 bp
    • CIGAR string
      24M mismatches: 0 - insertions: 0 - deletions: 0
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332262788
      XM_003280393
      1 of 6 hits reported for Nomascus leucogenys.
    • Hit length
      2,728 bp
    • E Value
      6.88E-4
    • BLAST Score
      48.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      XM_003280393
      0.88% cov
    • Alignment Length
      24 bp
    • CIGAR string
      24M mismatches: 0 - insertions: 0 - deletions: 0
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:197103075
      NM_001134146
    • Hit length
      2,809 bp
    • E Value
      6.88E-4
    • BLAST Score
      48.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      NM_001134146
      0.85% cov
    • Alignment Length
      24 bp
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:325464350
      JF432729
      1 of 2 hits reported for synthetic construct.
    • Hit length
      2,088 bp
    • E Value
      6.88E-4
    • BLAST Score
      48.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      JF432729
      1.15% cov
    • Alignment Length
      24 bp
Occurrence
8 times in PatSeqDB
Tools
SEQ ID NO
3
Length
20
Sequence Type
DNA
Locations
Undetermined
Declared organism
Artificial
Determined organism
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:224809402
      NG_011530
      1 of 7 hits reported for Homo sapiens.
    • Hit length
      19,974 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      NG_011530
      0.1% cov
    • Alignment Length
      20 bp
    • CIGAR string
      20M mismatches: 0 - insertions: 0 - deletions: 0
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332250653
      XM_003274420
      1 of 2 hits reported for Nomascus leucogenys.
    • Hit length
      1,819 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      XM_003274420
      1.1% cov
    • Alignment Length
      20 bp
    • CIGAR string
      20M mismatches: 0 - insertions: 0 - deletions: 0
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:114647081
      XR_021144
      1 of 2 hits reported for Pan troglodytes.
    • Hit length
      1,823 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      XR_021144
      1.1% cov
    • Alignment Length
      20 bp
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:197099193
      NM_001132571
      1 of 3 hits reported for Pongo abelii.
    • Hit length
      1,997 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      NM_001132571
      1% cov
    • Alignment Length
      20 bp
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:307684463
      AB590117
    • Hit length
      1,109 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      AB590117
      1.8% cov
    • Alignment Length
      20 bp
  • Pan paniscus

    Pan paniscus

    • Public DB hit
      GI:211910964
      EF364078
      1 of 2 hits reported for Pan paniscus.
    • Hit length
      26,525 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      EF364078
      0.08% cov
    • Alignment Length
      20 bp
  • Pan troglodytes verus

    Pan troglodytes verus

    • Public DB hit
      GI:211910960
      EF364076
      1 of 7 hits reported for Pan troglodytes verus.
    • Hit length
      26,524 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      EF364076
      0.08% cov
    • Alignment Length
      20 bp
  • Gorilla gorilla

    Gorilla gorilla

    • Public DB hit
      GI:211910950
      EF364071
    • Hit length
      26,522 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      EF364071
      0.08% cov
    • Alignment Length
      20 bp
Occurrence
9 times in PatSeqDB
Tools
SEQ ID NO
4
Length
20
Sequence Type
DNA
Locations
Undetermined
Declared organism
Artificial
Determined organism
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:224809402
      NG_011530
      1 of 7 hits reported for Homo sapiens.
    • Hit length
      19,974 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      NG_011530
      0.1% cov
    • Alignment Length
      20 bp
    • CIGAR string
      20M mismatches: 0 - insertions: 0 - deletions: 0
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332250653
      XM_003274420
      1 of 2 hits reported for Nomascus leucogenys.
    • Hit length
      1,819 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      XM_003274420
      1.1% cov
    • Alignment Length
      20 bp
    • CIGAR string
      20M mismatches: 0 - insertions: 0 - deletions: 0
  • Callithrix jacchus

    Callithrix jacchus

    • Public DB hit
      GI:296212978
      XM_002753028
      1 of 2 hits reported for Callithrix jacchus.
    • Hit length
      1,203 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      XM_002753028
      1.66% cov
    • Alignment Length
      20 bp
    • CIGAR string
      20M mismatches: 0 - insertions: 0 - deletions: 0
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:145301558
      NM_001083949
    • Hit length
      1,596 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      NM_001083949
      1.25% cov
    • Alignment Length
      20 bp
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:114647081
      XR_021144
      1 of 2 hits reported for Pan troglodytes.
    • Hit length
      1,823 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      XR_021144
      1.1% cov
    • Alignment Length
      20 bp
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:197099193
      NM_001132571
      1 of 3 hits reported for Pongo abelii.
    • Hit length
      1,997 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      NM_001132571
      1% cov
    • Alignment Length
      20 bp
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:307684463
      AB590117
    • Hit length
      1,109 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      AB590117
      1.8% cov
    • Alignment Length
      20 bp
  • Pan paniscus

    Pan paniscus

    • Public DB hit
      GI:211910964
      EF364078
      1 of 2 hits reported for Pan paniscus.
    • Hit length
      26,525 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      EF364078
      0.08% cov
    • Alignment Length
      20 bp
  • Pan troglodytes verus

    Pan troglodytes verus

    • Public DB hit
      GI:211910960
      EF364076
      1 of 4 hits reported for Pan troglodytes verus.
    • Hit length
      26,524 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      EF364076
      0.08% cov
    • Alignment Length
      20 bp
  • Gorilla gorilla

    Gorilla gorilla

    • Public DB hit
      GI:211910950
      EF364071
    • Hit length
      26,522 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      EF364071
      0.08% cov
    • Alignment Length
      20 bp
Occurrence
9 times in PatSeqDB
Tools
SEQ ID NO
5
Length
21
Sequence Type
DNA
Locations
Undetermined
Declared organism
Artificial
Determined organism
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:194440702
      NG_008294
      1 of 7 hits reported for Homo sapiens.
    • Hit length
      52,215 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      NG_008294
      0.04% cov
    • Alignment Length
      21 bp
    • CIGAR string
      21M mismatches: 0 - insertions: 0 - deletions: 0
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:332814992
      XM_003309370
      1 of 4 hits reported for Pan troglodytes.
    • Hit length
      3,512 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      XM_003309370
      0.6% cov
    • Alignment Length
      21 bp
    • CIGAR string
      21M mismatches: 0 - insertions: 0 - deletions: 0
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332209615
      XR_120866
      1 of 2 hits reported for Nomascus leucogenys.
    • Hit length
      2,819 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      XR_120866
      0.74% cov
    • Alignment Length
      21 bp
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:297264561
      XM_002799016
      1 of 4 hits reported for Macaca mulatta.
    • Hit length
      4,289 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      XM_002799016
      0.49% cov
    • Alignment Length
      21 bp
  • Callithrix jacchus

    Callithrix jacchus

    • Public DB hit
      GI:296205096
      XM_002749568
      1 of 2 hits reported for Callithrix jacchus.
    • Hit length
      2,916 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      XM_002749568
      0.72% cov
    • Alignment Length
      21 bp
  • Oryctolagus cuniculus

    Oryctolagus cuniculus

    • Public DB hit
      GI:291391923
      XM_002712346
      1 of 2 hits reported for Oryctolagus cuniculus.
    • Hit length
      2,139 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      XM_002712346
      0.98% cov
    • Alignment Length
      21 bp
  • Trichomonas vaginalis G3

    Trichomonas vaginalis G3

    • Public DB hit
      GI:123435013
      XM_001308905
    • Hit length
      1,595 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      XM_001308905
      1.32% cov
    • Alignment Length
      21 bp
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:197100017
      NM_001133211
    • Hit length
      4,006 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      NM_001133211
      0.52% cov
    • Alignment Length
      21 bp
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:190691292
      EU831980
      1 of 2 hits reported for synthetic construct.
    • Hit length
      2,182 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      EU831980
      0.96% cov
    • Alignment Length
      21 bp
Occurrence
8 times in PatSeqDB
Tools
SEQ ID NO
6
Length
22
Sequence Type
DNA
Locations
Undetermined
Declared organism
Artificial
Determined organism
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:189458859
      NM_007315
      1 of 16 hits reported for Homo sapiens.
    • Hit length
      4,326 bp
    • E Value
      6.44E-3
    • BLAST Score
      44.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      NM_007315
      0.51% cov
    • Alignment Length
      22 bp
    • CIGAR string
      22M mismatches: 0 - insertions: 0 - deletions: 0
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:190691292
      EU831980
      1 of 9 hits reported for synthetic construct.
    • Hit length
      2,182 bp
    • E Value
      6.44E-3
    • BLAST Score
      44.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      EU831980
      1.01% cov
    • Alignment Length
      22 bp
Occurrence
8 times in PatSeqDB
Tools
SEQ ID NO
7
Length
27
Sequence Type
DNA
Locations
Undetermined
Declared organism
Artificial
Determined organism
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:332812551
      XM_003308872
      1 of 4 hits reported for Pan troglodytes.
    • Hit length
      3,840 bp
    • E Value
      1.78E-5
    • BLAST Score
      54 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      XM_003308872
      0.7% cov
    • Alignment Length
      27 bp
    • CIGAR string
      27M mismatches: 0 - insertions: 0 - deletions: 0
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332254930
      XM_003276541
      1 of 2 hits reported for Nomascus leucogenys.
    • Hit length
      4,103 bp
    • E Value
      1.78E-5
    • BLAST Score
      54 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      XM_003276541
      0.66% cov
    • Alignment Length
      27 bp
    • CIGAR string
      27M mismatches: 0 - insertions: 0 - deletions: 0
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:90186265
      NM_080657
      1 of 8 hits reported for Homo sapiens.
    • Hit length
      3,512 bp
    • E Value
      1.78E-5
    • BLAST Score
      54 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      NM_080657
      0.77% cov
    • Alignment Length
      27 bp
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:207079832
      NM_001135534
      1 of 2 hits reported for Pongo abelii.
    • Hit length
      3,184 bp
    • E Value
      1.78E-5
    • BLAST Score
      54 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      NM_001135534
      0.85% cov
    • Alignment Length
      27 bp
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:168148600
      CU676131
      1 of 4 hits reported for synthetic construct.
    • Hit length
      1,147 bp
    • E Value
      1.78E-5
    • BLAST Score
      54 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      CU676131
      2.35% cov
    • Alignment Length
      27 bp
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:297265390
      XM_001099610
    • Hit length
      2,162 bp
    • E Value
      4.35E-3
    • BLAST Score
      46.1 bits
    • Similarity
      96.3%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      XM_001099610
      1.25% cov
    • Alignment Length
      27 bp
Occurrence
9 times in PatSeqDB
Tools
SEQ ID NO
8
Length
20
Sequence Type
DNA
Locations
Undetermined
Declared organism
Artificial
Determined organism
  • Sus scrofa

    Sus scrofa

    • Public DB hit
      GI:335285928
      XM_003354936
      1 of 5 hits reported for Sus scrofa.
    • Hit length
      1,770 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      XM_003354936
      1.13% cov
    • Alignment Length
      20 bp
    • CIGAR string
      20M mismatches: 0 - insertions: 0 - deletions: 0
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:332812551
      XM_003308872
      1 of 4 hits reported for Pan troglodytes.
    • Hit length
      3,840 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      XM_003308872
      0.52% cov
    • Alignment Length
      20 bp
    • CIGAR string
      20M mismatches: 0 - insertions: 0 - deletions: 0
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332254930
      XM_003276541
      1 of 2 hits reported for Nomascus leucogenys.
    • Hit length
      4,103 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      XM_003276541
      0.49% cov
    • Alignment Length
      20 bp
    • CIGAR string
      20M mismatches: 0 - insertions: 0 - deletions: 0
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:297265390
      XM_001099610
      1 of 2 hits reported for Macaca mulatta.
    • Hit length
      2,162 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      XM_001099610
      0.93% cov
    • Alignment Length
      20 bp
  • Callithrix jacchus

    Callithrix jacchus

    • Public DB hit
      GI:296224541
      XM_002758049
      1 of 2 hits reported for Callithrix jacchus.
    • Hit length
      1,137 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      XM_002758049
      1.76% cov
    • Alignment Length
      20 bp
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:90186265
      NM_080657
      1 of 4 hits reported for Homo sapiens.
    • Hit length
      3,512 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      NM_080657
      0.57% cov
    • Alignment Length
      20 bp
  • Bos taurus

    Bos taurus

    • Public DB hit
      GI:114052065
      NM_001045941
    • Hit length
      2,588 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      NM_001045941
      0.77% cov
    • Alignment Length
      20 bp
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:207079832
      NM_001135534
    • Hit length
      3,184 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      NM_001135534
      0.63% cov
    • Alignment Length
      20 bp
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:168148600
      CU676131
      1 of 4 hits reported for synthetic construct.
    • Hit length
      1,147 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      CU676131
      1.74% cov
    • Alignment Length
      20 bp
Occurrence
9 times in PatSeqDB
Tools
SEQ ID NO
9
Length
23
Sequence Type
DNA
Locations
Undetermined
Declared organism
Artificial
Determined organism
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:335892866
      NG_029106
      1 of 19 hits reported for Homo sapiens.
    • Hit length
      10,445 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      NG_029106
      0.22% cov
    • Alignment Length
      23 bp
    • CIGAR string
      23M mismatches: 0 - insertions: 0 - deletions: 0
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:332835482
      XM_001147501
      1 of 3 hits reported for Pan troglodytes.
    • Hit length
      1,747 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      XM_001147501
      1.32% cov
    • Alignment Length
      23 bp
    • CIGAR string
      23M mismatches: 0 - insertions: 0 - deletions: 0
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:208966577
      AB463790
    • Hit length
      1,523 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      AB463790
      1.51% cov
    • Alignment Length
      23 bp
  • Pan paniscus

    Pan paniscus

    • Public DB hit
      GI:121484161
      DQ977293
    • Hit length
      2,082 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      DQ977293
      1.1% cov
    • Alignment Length
      23 bp
  • Gorilla gorilla

    Gorilla gorilla

    • Public DB hit
      GI:120975091
      DQ976558
    • Hit length
      1,811 bp
    • E Value
      2.17E-3
    • BLAST Score
      46.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      DQ976558
      1.27% cov
    • Alignment Length
      23 bp
Occurrence
8 times in PatSeqDB
Tools
SEQ ID NO
10
Length
19
Sequence Type
DNA
Locations
Undetermined
Declared organism
Artificial
Determined organism
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:332835482
      XM_001147501
      1 of 2 hits reported for Pan troglodytes.
    • Hit length
      1,747 bp
    • E Value
      2.65E-1
    • BLAST Score
      38.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      XM_001147501
      1.09% cov
    • Alignment Length
      19 bp
    • CIGAR string
      19M mismatches: 0 - insertions: 0 - deletions: 0
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:98985820
      NM_001572
      1 of 15 hits reported for Homo sapiens.
    • Hit length
      1,972 bp
    • E Value
      2.65E-1
    • BLAST Score
      38.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      NM_001572
      0.96% cov
    • Alignment Length
      19 bp
    • CIGAR string
      19M mismatches: 0 - insertions: 0 - deletions: 0
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:208966577
      AB463790
    • Hit length
      1,523 bp
    • E Value
      2.65E-1
    • BLAST Score
      38.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      AB463790
      1.25% cov
    • Alignment Length
      19 bp
Occurrence
8 times in PatSeqDB
Tools

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